Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03971 ATGTACCATTCTTTAACAAATCAGATGAACAACATCTCAAAGGAGTGGACATGGGACGGAGATAAAGGCTTTGAGGAAAACCTCCTCTTAGTAAAACATTCTCAGATGATCGAGGAAGACCGCTTTGAGTTGCCGACAATCCCAGATAATTGTATTTCAAAAGATGATCCTTCAAATGATGAAAACAAAGATCCTCCACTTAAGAATAAGATCAGGAAAGTGTTTCATTGGAAAGAAGAAGAACACAGGTTATTTCTAGAGGGGATAGAGATGTATGGCAGGGGAAATTGGAAAGCAATTTCAAAACATGTTGGTACAAAAACTTCAATTCAAGTTGCTAGCCATGCTCAAAAGCATTTCATTCGAGTAAGAGTTGATCAACAAAGTGGTTATTCAACAAAAAAGAGTAAAAGAAGAAGCAAGTTTGACACCACCTCATGGAATGGAGATTTCCACCCTCTTCTCTATAGGGACTACATTCCACCTTCTCCACCAAATGTTGAAACAGAACCAACTATAGAGGAGTTACTTGAACAATTTTATTACTAA 549 0.3734 MYHSLTNQMNNISKEWTWDGDKGFEENLLLVKHSQMIEEDRFELPTIPDNCISKDDPSNDENKDPPLKNKIRKVFHWKEEEHRLFLEGIEMYGRGNWKAISKHVGTKTSIQVASHAQKHFIRVRVDQQSGYSTKKSKRRSKFDTTSWNGDFHPLLYRDYIPPSPPNVETEPTIEELLEQFYY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03971 182 PANTHER TRANSCRIPTION FACTOR KUA1 29 148 - -
Trre9g03971 182 Pfam Myb-like DNA-binding domain 77 119 IPR001005 -
Trre9g03971 182 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 122 IPR006447 GO:0003677
Trre9g03971 182 CDD SANT 77 120 IPR001005 -
Trre9g03971 182 SMART sant 73 122 IPR001005 -
Trre9g03971 182 SUPERFAMILY Homeodomain-like 72 124 IPR009057 -
Trre9g03971 182 ProSiteProfiles Myb-like domain profile. 77 120 IPR001005 -
Trre9g03971 182 Gene3D - 76 123 - -
Trre9g03971 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 124 IPR017930 -
Trre9g03971 182 MobiDBLite consensus disorder prediction 48 67 - -
Trre9g03971 182 ProSiteProfiles SANT domain profile. 77 124 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03971 Trre-Chr9 47809232 47810178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03971 77 122 EF-hand Containing Proteins AT3G07740 39.130 8.27e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g03971 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03971 - - tpra:123922541 228.794