Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03964 ATGAAGTATTTTTCAAAGGGTTTTAAGTGTGAAATTGTTCTCTGCTGCTGTTTTCTATTGGCTGCTAGTCAGAGAACTGACCCTTCTGAAGCTGTTACATTGAGAAGAATAAGAGACAATTTGATTGATATCAATGGAAATTTGAGCAGCTGGAGTCGCGGAGACCCATGTAGCTCCAAGTGGACAGGGGTTATGTGCTCGATAGTTGATGGCTATCTACACGTTCAACGATTGCATCTAATGAATATGAGCTTGGCTGGAACATTGGCACCTGAGATTGGAAACTTATCTCATCTTGAAATATTGGACTTTATGTGGAACAACATAAGTGGGCCTATTCCAAAAGAAATTGGCAATATCAAAACTTTGAAACTCTTGCTCTTGAATGGAAATCAATTAACAGGTCATTTACCAGAAGAGCTTGGCTATCTTCCAGTTTTGAACAGAATACAAATTGATGAGAACAATATTACAGGACGAATACCTTTGTCCTTTGCAAACTTGACAAATGCACAACACTTTCATATGAATAACAATTCACTTAGTGGACAAATTCCTTCACAGCTTTCTGGCTTAAAAAACCTTCTTCATCTTCTTCTTGACAACAACAATTTATCAGGACACCTCCCAGATGAACTTGCTGAGATGCCAAACCTAAATATACTTCAACTTGATAACAACAACTTTGGTGGAAATAGCATTCCAGATTCTTATAGCAACATGTCAAAGTTATTGAAATTGAGCCTTAGGAACTGCAACTTAACCGGACCGGTTCCTGATTTAAGCAGGATACCGCACCTTGGTTATCTTGATCTCAGTTTCAATCAATTGAGTGAATCTATTCCTAGTAATAAGCTATCTGAAAATATCACAACCATTGATTTATCAAATAATAAGCTTACTGGAACTATTCCTTCTTACTTTTCTGATCTTCCTCATCTTCAGAAATTGTCAATTTCAAACAATGAACTGAGTGGCGATGTTTCCTCTTCCATTTGGCAGAACAAGACTTTAAATGCAACAGAAAAGCTTTTCTTGAACATGCAAAATAACCAACTTACGACCATATCAGGAAACATAACAAATCTTCCTCCAAATATCACAATCCGGCTTGAGGGGAATCCTATATGCTCAAATAATAACAATACCTTAGTTCAATTATGTGGATCTGAAAATGAAACTGATATGAATGGTAACTCCAATATTGTTTGTCCAAGTCAACCATGCCCTCCTCCATATGAATACTCTTTGGAGTGTGTCTGTGTAGTGCCGTTGCTCGTTCATTATCGGTTGAAAAGTCCCGGATTTTCAGATTTCAATACATATGTGGAAGAATTTGAAATCTTCTTAACAAGTGGTCTTAACATACATAGTAATCAGCTATTCATTAATAGTTTTGTGTGGGAAGAAAGTCGATTGAGAATGTACTTGAAGCTTTTTCCGGTTTCTGTTGATAATACAACGCATCATACTTTCAATCAAAGCGAGGTGATTCGATTAAGAGACATGTTCAGAGAATGGGAAATAAATGAGAGTGACTTGTTTGGACCTTATGAACTTCTTGACTTTGTTCTCCTCGATCCTTACAAAGAGATGACTATCTCCTCTTCGAGTTCAGGAATAAGCAAAGGTGCATTGGTTGGAATCGTCTTAGGTGCAATTGCATGTTCAATTACATTATCTGTAATTGTTGCTATTCTTATATTTAGAATACGTTTGAAAGATTACCGTACACTTTCCAGACGGCCTAAAACTTCGAAGATCTCAATAAAAATTGATGGTGTAAGATCTTTCAATTATGAAGAAATGGCTTTGGCTACAAACAATTTCAGCCAATCTGCGCAAGTTGGACAAGGCGGGTATGGGAAGGTTTATAAAGGAAATCTACCTGATGGAACTGTTGTTGCCATTAAACGTGCGCAAGAAGGTTCACTACAAGGTGAGAAGGAGTTTCTTACAGAAATACAACTGTTATCGAGGTTACATCATCGCAACCTTGTGTCCCTGATTGGTTATTGTGATGAAGATGGTGATCAGATGCTGGTTTATGAATATATGCCAAATGGAACACTGAAGGATCACCTTTCTGCTCATTCTAAAGAACCTCTTAGTTTTCCCATGAGATTGAAGATTGCTCTAGGATCAGCTAAAGGTCTTGTGTATCTACACACAGAGGCTGATCCTCCAATATTCCACAGAGATGTCAAAGCTAGTAACATATTATTAGACTCAAAGTTCATAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTAGCTCCAGTTCCAGATATTGAAGGCAATTTGCCTAATCATATATCTACAGTTGTAAAGGGGACCCCGGGTTACCTTGATCCGGAGTACTTTTTAACTCGCAAGTTGACCGACAAAAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAAATTGTGACTGGAAAGCCACCAATCTTCCATGGTGAAAATATTATTAGACAGGTTAAACTGGCATTCGAATCAGGTGGAGTATTTTCGATCATTGATAACCAAATGGGATTTTACACTTCCGAGATTGTGGAAAAGTTTTTAACATTGGGTTTAAAGTGTTGCAAAGATGCACCAGATGAAAGGCCTAAAATGACAGAAGTAGCTAGAGAACTTGAGAACATATTGGCTATGATGCCTGAATACCATGCCAAAAAGGGAGGTGAATATGATACAAGTGATTCTGGAACCACATTTAGTTCACAACCTTCATCATCTACTATAAAGAATCCTTTTATTTCAGAAGATATTTTGGGTAGTGACCTTGTTAGTGGTGATGTACCTACCATTAGACCAAGATAG 2823 0.3744 MKYFSKGFKCEIVLCCCFLLAASQRTDPSEAVTLRRIRDNLIDINGNLSSWSRGDPCSSKWTGVMCSIVDGYLHVQRLHLMNMSLAGTLAPEIGNLSHLEILDFMWNNISGPIPKEIGNIKTLKLLLLNGNQLTGHLPEELGYLPVLNRIQIDENNITGRIPLSFANLTNAQHFHMNNNSLSGQIPSQLSGLKNLLHLLLDNNNLSGHLPDELAEMPNLNILQLDNNNFGGNSIPDSYSNMSKLLKLSLRNCNLTGPVPDLSRIPHLGYLDLSFNQLSESIPSNKLSENITTIDLSNNKLTGTIPSYFSDLPHLQKLSISNNELSGDVSSSIWQNKTLNATEKLFLNMQNNQLTTISGNITNLPPNITIRLEGNPICSNNNNTLVQLCGSENETDMNGNSNIVCPSQPCPPPYEYSLECVCVVPLLVHYRLKSPGFSDFNTYVEEFEIFLTSGLNIHSNQLFINSFVWEESRLRMYLKLFPVSVDNTTHHTFNQSEVIRLRDMFREWEINESDLFGPYELLDFVLLDPYKEMTISSSSSGISKGALVGIVLGAIACSITLSVIVAILIFRIRLKDYRTLSRRPKTSKISIKIDGVRSFNYEEMALATNNFSQSAQVGQGGYGKVYKGNLPDGTVVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVSLIGYCDEDGDQMLVYEYMPNGTLKDHLSAHSKEPLSFPMRLKIALGSAKGLVYLHTEADPPIFHRDVKASNILLDSKFIAKVADFGLSRLAPVPDIEGNLPNHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLEIVTGKPPIFHGENIIRQVKLAFESGGVFSIIDNQMGFYTSEIVEKFLTLGLKCCKDAPDERPKMTEVARELENILAMMPEYHAKKGGEYDTSDSGTTFSSQPSSSTIKNPFISEDILGSDLVSGDVPTIRPR 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03964 940 SUPERFAMILY L domain-like 41 409 - -
Trre9g03964 940 MobiDBLite consensus disorder prediction 894 919 - -
Trre9g03964 940 SUPERFAMILY Protein kinase-like (PK-like) 595 891 IPR011009 -
Trre9g03964 940 Gene3D Transferase(Phosphotransferase) domain 1 686 900 - -
Trre9g03964 940 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 686 895 - -
Trre9g03964 940 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Trre9g03964 940 Gene3D Ribonuclease Inhibitor 187 286 IPR032675 -
Trre9g03964 940 MobiDBLite consensus disorder prediction 898 919 - -
Trre9g03964 940 Pfam Protein kinase domain 611 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03964 940 CDD STKc_IRAK 616 882 - -
Trre9g03964 940 Pfam Leucine Rich repeats (2 copies) 289 329 IPR025875 -
Trre9g03964 940 PANTHER RECEPTOR-LIKE PROTEIN 55 43 882 - -
Trre9g03964 940 Gene3D Phosphorylase Kinase; domain 1 581 685 - -
Trre9g03964 940 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 28 186 - -
Trre9g03964 940 ProSitePatterns Protein kinases ATP-binding region signature. 616 638 IPR017441 GO:0005524
Trre9g03964 940 FunFam Leucine-rich repeat protein kinase family protein 574 685 - -
Trre9g03964 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Trre9g03964 940 Gene3D Ribonuclease Inhibitor 287 392 IPR032675 -
Trre9g03964 940 ProSiteProfiles Protein kinase domain profile. 610 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03964 940 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Trre9g03964 940 SMART serkin_6 610 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03964 Trre-Chr9 47755151 47762633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03964 12 892 Receptor kinase-like Gene Family AT5G01950 56.904 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre9g03964 Pkinase 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03964 - - gmx:100801035 1354.73