Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03959 ATGTCTCTTCAGAAGCTCAAGCAACTGAAACTGGTAACACCAAGTTCAGTTTTTGAAGATGACCCATCAATTAAAAGGAAGAGAAAACCCAAAAGAAAGCTTCTTCGTATCATAATCACCGACCATGATGCTACTGATTCTGATTCCTCCGATGAAGAGAGAGAAAAAAACAACCAAAACAGAACAGAGAGAAAGGGTAAAGGAAAGGGAAAGAGAGAAATCTTTGAAATTAACATGCACCGTCCCGTACTAGATTCTTCTTTCTCATTTTCTTCTCCTTCATCTTCTTATTCATCGGAGAAAATCCACAAAAAACGCAAAAGACTCAAGAAAACGCCACCACCAACCTCCGCCGTCACGCTCCACCACAACAAGTACCGCGGTGTGAGACAGCGACCTTGGGGAAAATGGGCTGCTGAGATCCGTGACCCGACCCGCCGGAAACGTCTCTGGCTTGGAACATTCACAACGGCGGAAGAAGCCGCCGCTGAGTATGATAGAGTGGCGGTGATGTTAAAAGGTCCTAACGCCGTTACCAACTTTCCGGTAACTCAAACGGAAGCAGAAACTGAACAGCCGCCGGAAAATAACTCCGGTGGGATTGACGGCGGAGCTGGTTACTCCGACGCTTTGGCTTCTCCGACGTCTGTTTTAACTTACTGTGACTCGACGCCGTTTGACGGTTTCCGTTACTGTGACGTGGATGCTTTTGGGTTTAACATTGATGCGCCGTTAAGTTTGCCGGAAGTTAACGTTACGCTGACGTGTCATCAGAAATTGGAAAAAGAAGAAGCGTTTGAAGAGTTTAATCTTGACGAGTTTATGACGTGGCCGTACTGA 840 0.4631 MSLQKLKQLKLVTPSSVFEDDPSIKRKRKPKRKLLRIIITDHDATDSDSSDEEREKNNQNRTERKGKGKGKREIFEINMHRPVLDSSFSFSSPSSSYSSEKIHKKRKRLKKTPPPTSAVTLHHNKYRGVRQRPWGKWAAEIRDPTRRKRLWLGTFTTAEEAAAEYDRVAVMLKGPNAVTNFPVTQTEAETEQPPENNSGGIDGGAGYSDALASPTSVLTYCDSTPFDGFRYCDVDAFGFNIDAPLSLPEVNVTLTCHQKLEKEEAFEEFNLDEFMTWPY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03959 279 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Trre9g03959 279 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Trre9g03959 279 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Trre9g03959 279 MobiDBLite consensus disorder prediction 36 74 - -
Trre9g03959 279 MobiDBLite consensus disorder prediction 88 120 - -
Trre9g03959 279 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Trre9g03959 279 MobiDBLite consensus disorder prediction 15 74 - -
Trre9g03959 279 MobiDBLite consensus disorder prediction 186 206 - -
Trre9g03959 279 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Trre9g03959 279 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Trre9g03959 279 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Trre9g03959 279 PIRSF PTI6 1 279 IPR017392 GO:0003700
Trre9g03959 279 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Trre9g03959 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 221 - -
Trre9g03959 279 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03959 Trre-Chr9 47695404 47696243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03959 33 229 AP2-EREBP Transcription Factor Family AT4G27950 45.098 1.97e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g03959 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03959 K13434 - gmx:100800489 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03959 9 47695404 47696243 Trre9g03959 9 47695404 47696243 ECH
Trre9g03959 9 47695404 47696243 Trre7g05526 7 61012861 61013739 PCT