Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03958 ATGGCGAATGAAACACCAAATGATTTGAAGGAGGAGGTTCCTGATATTGCACCATTTGATCCTACTAAGAAGAAGAAAAAGAAGAAAGGTACAGTTATAGATCCTGCAGATGATGAATCAGTGGATAAATTGACCGAGAAGACAGAAAATCTTTCAGTTTCTGATGGGATTGATACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGCCTGTTGAAATCAGTAACTTAAATGAGGAGAGTGGAGATGCAGTTGAAGATTTGGATGATCATGCCGAAGATGATGAAGAAGAAGCAGTTGCTTTGCAGCCTCGTTATCCTTGGGAAGGGAGTGACCGTAATTATCAATATGAGGAGCTTATTGGCAGGGTGTTTAATATTCTACGCGAAAATAATCCAGAACTTACTGGAGATTGGCAAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACCGTGTTTGTGAATTTTATGGATCTGTGCAAAACGATGCATCGACAGCCAGAACATGTTATGACTTTCTTGCTTGCTGAACTGGGTACTAGTGGCTCCCTAGATGGACAACAAAGATTGGTTGTAAAGGGAAGATTTGCACCAAAGAATTTTGAAGGAATTCTGCGACGATATGTCAATGAATACGTTATTTGTCTTGGATGCAAGAGTCCAGACACACTACTTACAAAGGAGAATCGTCTATTCTTTCTCCGGTGTGAGAAGTGTGGATCAGGAAGATCGGTTGCTCCAATCAAAGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAATGCAGGGGGAACATGA 810 0.4148 MANETPNDLKEEVPDIAPFDPTKKKKKKKGTVIDPADDESVDKLTEKTENLSVSDGIDTAFAGLKKKKKPVEISNLNEESGDAVEDLDDHAEDDEEEAVALQPRYPWEGSDRNYQYEELIGRVFNILRENNPELTGDWQRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTLLTKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGGT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03958 269 SMART eIF2Bneu4 138 247 IPR002735 GO:0003743|GO:0006413
Trre9g03958 269 Gene3D - 111 253 - -
Trre9g03958 269 Pfam Domain found in IF2B/IF5 139 246 IPR002735 GO:0003743|GO:0006413
Trre9g03958 269 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 217 252 IPR016190 GO:0003743|GO:0006413
Trre9g03958 269 FunFam Eukaryotic translation initiation factor 2 subunit 111 253 - -
Trre9g03958 269 MobiDBLite consensus disorder prediction 1 45 - -
Trre9g03958 269 MobiDBLite consensus disorder prediction 30 45 - -
Trre9g03958 269 MobiDBLite consensus disorder prediction 75 99 - -
Trre9g03958 269 MobiDBLite consensus disorder prediction 8 22 - -
Trre9g03958 269 MobiDBLite consensus disorder prediction 79 96 - -
Trre9g03958 269 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 114 220 IPR016189 GO:0003743|GO:0006413
Trre9g03958 269 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 117 267 IPR045196 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03958 Trre-Chr9 47668784 47672117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03958 1 264 Eukaryotic Initiation Factors Gene Family AT5G20920 73.034 6.65e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03958 K03238 - gmx:100783618 456.062