Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03952 ATGGCAAAGCACATCTCAAACTTTTCTCATTTCTTTGTCATTCTAGTTCTAGTTGTAGCTTGTTGGAATATGGGGATACCACAAGTGTTAGGAGATACAAAAGCATGTACAACACCTTTGGGAGCATGTGGTCCACGTGGAAATTGTGACCAAAGATGCAAATCTATGCATAGTGATGGTGAAGGGTCATGTGACTTAGGCCTATGTACCTGTGTTTATGGGTGCTATACTCCTCCAACTCCAGTTCAACCAAAACTTTGCACTATTGGTCTTGGATTATGTACTAATCCAAATGAGTGCAATAAAAAATGTGCTAGTAATTACAATCATGGTCAAGGGAGTTGTGACTATTTAGGCACAGTAAATCTTTGCAATTGCATTTATTATTGTTAG 393 0.3842 MAKHISNFSHFFVILVLVVACWNMGIPQVLGDTKACTTPLGACGPRGNCDQRCKSMHSDGEGSCDLGLCTCVYGCYTPPTPVQPKLCTIGLGLCTNPNECNKKCASNYNHGQGSCDYLGTVNLCNCIYYC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03952 130 PANTHER DEFENSIN-LIKE PROTEIN 183 1 130 IPR039641 -
Trre9g03952 130 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03952 Trre-Chr9 47624405 47624911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03952 9 130 Plant Defensins Gene Families AT4G30070 38.168 2.85e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03952 - K12236 gsj:114386687 148.288