Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03950 ATGGGGGTTGAAGTTTGCATGAATAATTTCTGTAAAGAAGGTTCTGTTGGTGAATGGAAGAAAGGTTGGTCTTTGATCTCTGGTGGATTTGCCAAACTCTGCAACAAATGCGGACTTGCGTATGAGAATTCAGTTTTCTGCGATCAATTCCACCGTCTTGAATCCGGTTGGAGGGAATGCAGCAAATGCAAAAAGCTTATCCATTGCGGATGTATAGCATCAAAGTCTTTGTTCGAGTATCTTGATTTCGGTGGCATAGGTTGTGTTACCTGTGTTAAGGCTTCCCAGCTTTGTCTGGATACTGGGAATGCTAATAGGTTTGCTCATATATCAAAAACCAATGCAAGTCATCGATATGCTGAACATACTGATGTTGGACTATCGGTGGAACGTGTTGGTAAAGAAAACCTTGTGCAGTTGCGTAAAACTGCTGAAGCTGGTGAAACAAGCTTTTGGCCTCAACCTCGAAGAGATGGTGTGTTTTCAAGTATTGGTTCAAAAATCGAAGAAATGAATTGTCGATTCAACAGAACTGATACAGGGTTTTTAAATGCGATGAAACATTCTAGTCATTTATCAACATTTACTTCATCGGAGAATAATAGACCAACATGGGAGACCAAAAGTAGAGATGAACCACTTTCGCTGAAGATTTCTCTTGGAACCTCATCGAGAAATTGTCTCCTGCCTTCTGCCACAGAGATTGCAGATGGTAAACTGGAGGGTAAAGCATCGTCTATTTCTCAACAAGGGCTAAATACTTACCCTATATTGGCTAAACAATCGAAGACCAGTGTTACCATGAATCTTGAAACAAATAAAAGCATGATTTCTCATCCACGCATTGGTCGGCCACCTGCTGATATGAAAGGGAAAAATCAGCTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCTGGGGATTTGAAGTCTAAGATAGTGCCGTTATTTGAGAAGGTGTTAAGTCCTAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCGTGTGCTGAGCATTTTCTTCCTGCCATTGTGCATTCAGAAGGCGTCCCTTTACAGTTCCAAGATATTAAGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAATTCTTGCGGTTAAATGCTGGCGATACTGTAACATTTAGTCGGATAGATCCTGGTGAAAAATTTGTAATTGGTTTTAGAAGAGCATCGGGTTCTATCGATACGCAGGATGAATCTACATCTGCTCATTCTAACGGGATTTCGACTAAGGATACAAGTGTTTCTGGTGCAACTAAGAATCAGAACTCATTAAGTAGTTTTTCTAATCTTCTTCAATCAATGAAAGGTAACGGCGGGGAACTTTACTCAAACGGACATTCAGAACATCTGCATTTGGGTAACGGAACTGCTGATTGGCTGAAAACTGCACATTCGGAGGAGGCGGTGAACAATGGTCCATTGCAGCAACTGGTTTCGGATTCAGAAAAGAAGAGTACTTGCAAGATTGGAACAAAAACTAAGAGGTTGCACATTCGTAGCGAAGATTCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAAGACTTGCTTTGTCCACCGCCTAATGTCAAGCCAAATATTGTACAAATTGACGACCAAGTATTCGAAGAATATGATGAACCCCCGGTTTTCGGAAAGGGAAATATAACCAATGCCTGTCCATCTGGGTCTCCAGATTCTGCATCAGAGCAGCTCGGTCCAAACGAACAAGAAAATCTTCTGCAAACCAGAAAAGTTTCTAAAAAGCGAAAAGTTGTAGAAAAGAGTAAGTCGATTCAAGAAGACATGCATCAAAACCTAGATACTCTTGCAAGTATGGCAATTTTAGGAGATAATCTTGCTGACCGTGATGAGTCATGTTCAGGTGGAGTCACGACAAAACATCCGAGACATCGTCTTGGATGCACTTGTATCGTCTGCATTCAACCTCCAAGTGGACAAGGAAAACATAAACCGACATGCACTTGCCTTGCGTGTGAAACTTTGAAGCGTAGGTCCAAGACTCTTATGATGCGCAAGAAGAAAAACCAATCAGAATCTGAAGCAGCCGCTACCCAAAATGATCAAACGAATCATAGTGGTGAAGCAGATACCAATGGTGGTGCATCAAGACAAGATACAAGTCACTCAACGGACGAGGTAAGCCTAAACGGTGGTCAGCAAGAGGTTGTTGAGCCGAGTGCTGTGGGACAATTAGATTTGAATTGTCATCCTAATCATGAAGATATGTAA 2334 0.4186 MGVEVCMNNFCKEGSVGEWKKGWSLISGGFAKLCNKCGLAYENSVFCDQFHRLESGWRECSKCKKLIHCGCIASKSLFEYLDFGGIGCVTCVKASQLCLDTGNANRFAHISKTNASHRYAEHTDVGLSVERVGKENLVQLRKTAEAGETSFWPQPRRDGVFSSIGSKIEEMNCRFNRTDTGFLNAMKHSSHLSTFTSSENNRPTWETKSRDEPLSLKISLGTSSRNCLLPSATEIADGKLEGKASSISQQGLNTYPILAKQSKTSVTMNLETNKSMISHPRIGRPPADMKGKNQLLSRYWPRITDQELEKLSGDLKSKIVPLFEKVLSPSDAGRIGRLVLPKACAEHFLPAIVHSEGVPLQFQDIKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQFLRLNAGDTVTFSRIDPGEKFVIGFRRASGSIDTQDESTSAHSNGISTKDTSVSGATKNQNSLSSFSNLLQSMKGNGGELYSNGHSEHLHLGNGTADWLKTAHSEEAVNNGPLQQLVSDSEKKSTCKIGTKTKRLHIRSEDSLELRLTWEEAQDLLCPPPNVKPNIVQIDDQVFEEYDEPPVFGKGNITNACPSGSPDSASEQLGPNEQENLLQTRKVSKKRKVVEKSKSIQEDMHQNLDTLASMAILGDNLADRDESCSGGVTTKHPRHRLGCTCIVCIQPPSGQGKHKPTCTCLACETLKRRSKTLMMRKKKNQSESEAAATQNDQTNHSGEADTNGGASRQDTSHSTDEVSLNGGQQEVVEPSAVGQLDLNCHPNHEDM 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03950 777 MobiDBLite consensus disorder prediction 714 758 - -
Trre9g03950 777 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 776 - -
Trre9g03950 777 Pfam B3 DNA binding domain 323 423 IPR003340 GO:0003677
Trre9g03950 777 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Trre9g03950 777 Gene3D - 301 426 IPR015300 -
Trre9g03950 777 SMART B3_2 323 424 IPR003340 GO:0003677
Trre9g03950 777 MobiDBLite consensus disorder prediction 428 454 - -
Trre9g03950 777 MobiDBLite consensus disorder prediction 704 777 - -
Trre9g03950 777 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Trre9g03950 777 CDD B3_DNA 321 422 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03950 Trre-Chr9 47589311 47594185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03950 1 763 B3 DNA Binding Superfamily AT2G30470 41.563 7.37e-178 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g03950 B3 7.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03950 K09287 - psat:127118438 1055.05