Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03949 ATGGGGGTTGAAGTTTGCATGAATAATTTCTGTAAAGAAGGTTCTGTTGGTGAATGGAAGAAAGGTTGGTCTTTGATCTCTGGTGGATTTGCCAAACTCTGCAACAAATGCGGACTTGCGTATGAGAATTCAGTTTTCTGCGATCAATTCCACCGTCTTGAATCCGGTTGGAGGGAATGCAGCAAATGCAAAAAGCTTATCCATTGCGGATGTATAGCATCAAAGTCTTTGTTCGAGTATCTTGATTTCGGTGGCATAGGTTGTGTTACCTGTGTTAAGGCTTCCCAGCTTTGTCTGGATACTGGGAATGCTAATAGGTTTGCTCATATATCAAAAACCAATGCAAGTCATCGATATGCTGAACATACTGATGTTGGACTATCGGTGGAACGTGTTGGTAAAGAAAACCTTGTGCAGTTGCGTAAAACTGCTGAAGCTGGTGAAACAAGCTTTTGGCCTCAACCTCGAAGAGATGGTGTGTTTTCAAGTATTGGTTCAAAAATCGAAGAAATGAATTGTCGATTCAACAGAACTGATACAGGGTTTTTAAATGCGATGAAACATTCTAGTCATTTATCAACATTTACTTCATCGGAGAATAATAGACCAACATGGGAGACCAAAAGTAGAGATGAACCACTTTCGCTGAAGATTTCTCTTGGAACCTCATCGAGAAATTGTCTCCTGCCTTCTGCCACAGAGATTGCAGATGGTAAACTGGAGGGTAAAGCATCGTCTATTTCTCAACAAGGGCTAAATACTTACCCTATATTGGCTAAACAATCGAAGACCAGTGTTACCATGAATCTTGAAACAAATAAAAGCATGATTTCTCATCCACGCATTGGTCGGCCACCTGCTGATATGAAAGGGAAAAATCAGCTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCTGGGGATTTGAAGTCTAAGATAGTGCCGTTATTTGAGAAGGTGTTAAGTCCTAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCGTGTGCTGAGCATTTTCTTCCTGCCATTGTGCATTCAGAAGGCGTCCCTTTACAGTTCCAAGATATTAAGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAATTCTTGCGGTTAAATGCTGGCGATACTGTAACATTTAGTCGGATAGATCCTGGTGAAAAATTTGTAATTGGTTTTAGAAGAGCATCGGGTTCTATCGATACGCAGGATGAATCTACATCTGCTCATTCTAACGGGATTTCGACTAAGGATACAAGTGTTTCTGGTGCAACTAAGAATCAGAACTCATTAAGTAGTTTTTCTAATCTTCTTCAATCAATGAAAGGTAACGGCGGGGAACTTTACTCAAACGGACATTCAGAACATCTGCATTTGGGTAACGGAACTGCTGATTGGCTGAAAACTGCACATTCGGAGGAGGCGGTGAACAATGGTCCATTGCAGCAACTGGTTTCGGATTCAGAAAAGAAGAGTACTTGCAAGATTGGAACAAAAACTAAGAGGTTGCACATTCGTAGCGAAGATTCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAAGACTTGCTTTGTCCACCGCCTAATGTCAAGCCAAATATTGTACAAATTGACGACCAAGTATTCGAAGAATATGATGAACCCCCGGTTTTCGGAAAGGGAAATATAACCAATGCCTGTCCATCTGGGTCTCCAGATTCTGCATCAGAGCAGCTCGGTCCAAACGAACAAGAAAATCTTCTGCAAACCAGAAAAGGTGGAGTCACGACAAAACATCCGAGACATCGTCTTGGATGCACTTGTATCGTCTGCATTCAACCTCCAAGTGGACAAGGAAAACATAAACCGACATGCACTTGCCTTGCGTGTGAAACTTTGAAGCGTAGGTCCAAGACTCTTATGATGCGCAAGAAGAAAAACCAATCAGAATCTGAAGCAGCCGCTACCCAAAATGATCAAACGAATCATAGTGGTGAAGCAGATACCAATGGTGGTGCATCAAGACAAGATACAAGTCACTCAACGGACGAGGTAAGCCTAAACGGTGGTCAGCAAGAGGTTGTTGAGCCGAGTGCTGTGGGACAATTAGATTTGAATTGTCATCCTAATCATGAAGATATGTAA 2205 0.4218 MGVEVCMNNFCKEGSVGEWKKGWSLISGGFAKLCNKCGLAYENSVFCDQFHRLESGWRECSKCKKLIHCGCIASKSLFEYLDFGGIGCVTCVKASQLCLDTGNANRFAHISKTNASHRYAEHTDVGLSVERVGKENLVQLRKTAEAGETSFWPQPRRDGVFSSIGSKIEEMNCRFNRTDTGFLNAMKHSSHLSTFTSSENNRPTWETKSRDEPLSLKISLGTSSRNCLLPSATEIADGKLEGKASSISQQGLNTYPILAKQSKTSVTMNLETNKSMISHPRIGRPPADMKGKNQLLSRYWPRITDQELEKLSGDLKSKIVPLFEKVLSPSDAGRIGRLVLPKACAEHFLPAIVHSEGVPLQFQDIKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQFLRLNAGDTVTFSRIDPGEKFVIGFRRASGSIDTQDESTSAHSNGISTKDTSVSGATKNQNSLSSFSNLLQSMKGNGGELYSNGHSEHLHLGNGTADWLKTAHSEEAVNNGPLQQLVSDSEKKSTCKIGTKTKRLHIRSEDSLELRLTWEEAQDLLCPPPNVKPNIVQIDDQVFEEYDEPPVFGKGNITNACPSGSPDSASEQLGPNEQENLLQTRKGGVTTKHPRHRLGCTCIVCIQPPSGQGKHKPTCTCLACETLKRRSKTLMMRKKKNQSESEAAATQNDQTNHSGEADTNGGASRQDTSHSTDEVSLNGGQQEVVEPSAVGQLDLNCHPNHEDM 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03949 734 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Trre9g03949 734 SMART B3_2 323 424 IPR003340 GO:0003677
Trre9g03949 734 Gene3D - 301 426 IPR015300 -
Trre9g03949 734 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 591 - -
Trre9g03949 734 MobiDBLite consensus disorder prediction 428 454 - -
Trre9g03949 734 MobiDBLite consensus disorder prediction 671 715 - -
Trre9g03949 734 CDD B3_DNA 321 422 IPR003340 GO:0003677
Trre9g03949 734 MobiDBLite consensus disorder prediction 661 734 - -
Trre9g03949 734 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Trre9g03949 734 Pfam B3 DNA binding domain 323 423 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03949 Trre-Chr9 47589311 47594185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03949 3 665 B3 DNA Binding Superfamily AT4G32010 40.457 6.47e-169 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g03949 B3 7.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03949 K09287 - psat:127118438 1002.28