Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03941 ATGCAACATCAATCTTCAAACCCTAATCCCAATTCCAATCCCAATCTCAATCCTCACAATGCAAACACCGCATCTCAATTGCCACCACCAGCGCCACCATCATCTACGGCGGCGACAACCGCCGCTGGCAAATCCTCTCTATTCGCGCGCTCAAGCGGCAATGTCAGTTCCCATCACCGGCGAGCTCATTCGGAAGTCAATTTCCGGTTACCAGACGACATGATGGACTTATCACCGTCCGATCCATTCACCGGTGGATCGTCAACGGCGAGCTTAGATGAGATCGGATCCGAAGACGACCTATTCTCGACGTACATTGACATGGATAAGCTCGGAGGTTCGAATGAGTTGGGAGACGCCGGAGTAGATCTGGTTGGAAATGATGCGCCGGAGAAGAATCCGGTGAGGCCGAGGCATAGGCACAGTAATTCAGTTGATGGTTCTTCGTCGTTTGCGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAGTTAGCTGAACTTTGGTCTATTGATCCAAAGCGTGCAAAGAGAATACTTGCAAATCGACAGTCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGATATATACATGAACTAGAGCGCAAAGTTCAGACCCTGCAAACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATATCAGAGGGACACATCAGGTCTGAGTACTGAAAATACAGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCGCATCTTCGTGATGCTCTTAATGATGCACTGAAGAAAGAAGTTGAGAGGCTGAAAGTTGCTACCGGGGATATAATGAGCCACACTCAGTCTTTTAATCTTGGTATGCATCAGATGCAATTTACAGAATCAAATTTCGCTTCAATTCCACCGCAACAAGGTTCTTCTAATCACCGGAACACCCAGATGCCACTGTTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACAAATTCTCATTCATTTACAGAATTATTGCAAAATGACCAGATTGGTCGTTTTCAGGGACTTGACATTAGTAGTAAAGGAACAACTGTTGTAAAGTCTGAAGACCCCTCTCTTTCTGCAAGTGAGAGTAGCACTACATTTTGA 1122 0.4661 MQHQSSNPNPNSNPNLNPHNANTASQLPPPAPPSSTAATTAAGKSSLFARSSGNVSSHHRRAHSEVNFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGGSNELGDAGVDLVGNDAPEKNPVRPRHRHSNSVDGSSSFAEIMDGKKAMPPDKLAELWSIDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTSGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTQSFNLGMHQMQFTESNFASIPPQQGSSNHRNTQMPLFGHSPSSMPSHQLHQTNSHSFTELLQNDQIGRFQGLDISSKGTTVVKSEDPSLSASESSTTF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03941 373 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 23 337 - -
Trre9g03941 373 Pfam bZIP transcription factor 175 233 IPR004827 GO:0003700|GO:0006355
Trre9g03941 373 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 236 IPR004827 GO:0003700|GO:0006355
Trre9g03941 373 SMART brlzneu 171 235 IPR004827 GO:0003700|GO:0006355
Trre9g03941 373 FunFam probable transcription factor PosF21 174 227 - -
Trre9g03941 373 MobiDBLite consensus disorder prediction 1 24 - -
Trre9g03941 373 Coils Coil 191 218 - -
Trre9g03941 373 CDD bZIP_plant_RF2 176 225 IPR044759 GO:0003700|GO:0006355
Trre9g03941 373 MobiDBLite consensus disorder prediction 293 327 - -
Trre9g03941 373 MobiDBLite consensus disorder prediction 130 150 - -
Trre9g03941 373 SUPERFAMILY Leucine zipper domain 175 226 IPR046347 GO:0003700|GO:0006355
Trre9g03941 373 MobiDBLite consensus disorder prediction 354 373 - -
Trre9g03941 373 MobiDBLite consensus disorder prediction 36 55 - -
Trre9g03941 373 MobiDBLite consensus disorder prediction 1 94 - -
Trre9g03941 373 Gene3D - 175 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03941 Trre-Chr9 47451414 47453955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03941 6 373 bZIP Transcription Factor Family AT2G40620 49.265 1.03e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre9g03941 bZIP_1 2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03941 - - vra:106763153 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03941 9 47451414 47453955 Trre9g03941 9 47451414 47453955 ECH
Trre5g00838 5 5734290 5736712 Trre9g03941 9 47451414 47453955 PCT