Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03938 ATGGGTGGAAAGAAAGTGAAGCTTGCATTCATAGCCAAGGACTCAGCAAGAAAAGCAACATACAAGAAAAGGGTAAAAAGTTTGATGAAGAAGCTCAATGAAATCACAACCCTATGTGGAGTTGTGGGATGTGCTATAGTGTTCAATCCTGATAATCTTGAACCACAAATTTGGCCATCCATTCAAGGAGTACAAAGTGTGTTGTACCAATTCATGCATGTTCCCGAATATGATCGGGATCGAAAGATGTTGAACCAGGAGAGTTACTTGAAAGAAAAGATCCAAAAGTTGAATGAGAAGTTAACGAAAAAAGCGAAGGATAATAGGAAAATCGAGAAAACTGTTCAATTGTATCGCTTTCTTGAGAAAGGGGAGATTACAGAGGATTTAAGTGCTGGCGATCATGATGATCTCACACATGTGATTGATGAGAAAATGAAGGAAATTAATATGAAGATGATGGAAATGGAGATCACTGATCAAAGTGCTCCAAGGTTTGTGAATGGTAGCTAA 513 0.3821 MGGKKVKLAFIAKDSARKATYKKRVKSLMKKLNEITTLCGVVGCAIVFNPDNLEPQIWPSIQGVQSVLYQFMHVPEYDRDRKMLNQESYLKEKIQKLNEKLTKKAKDNRKIEKTVQLYRFLEKGEITEDLSAGDHDDLTHVIDEKMKEINMKMMEMEITDQSAPRFVNGS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03938 170 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Trre9g03938 170 Gene3D - 14 123 IPR036879 GO:0003677|GO:0046983
Trre9g03938 170 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre9g03938 170 PANTHER MADS BOX PROTEIN 4 153 - -
Trre9g03938 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre9g03938 170 Coils Coil 94 114 - -
Trre9g03938 170 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Trre9g03938 170 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre9g03938 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03938 Trre-Chr9 47434097 47434609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03938 1 153 Type I MADS-box Gene Family AT5G48670 43.137 1.83e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre9g03938 SRF-TF 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03938 - - tpra:123881962 258.84