Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03921 ATGTTTGGATCTGCAGAGACAGAAAGACTAGATGAAATAGCAAAAATCAATTCAGAGGGAGAAACATCATCTCAAATGGGAAGGAAGCATTTTCATGGTCAAATTATTGGAACAACCTTAAACACAGTAACTCCTTGTGCTGCATCTGTTCATAAAGTATTTGGTGCTAGCAATGTCTCCAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCTGATGCTGCAAATAGTATGGTTTATGAAGCAAATTTGAGATTAAGAGATCCTGTTTATGGATGCATGGGTGTAATATCAACATTACAACAACAAGTTCAATCTTTACAAGCTGAACTTCATGCAATTAGAGCTGAAATACTCAAATACAAATATAGAGAAGCAGCTTCTTTTATTTCTTCTCAAGTATCAATCCCTACAAATAATGCAAACTCACAATGTCTTTCTCAACCTCTTGTTCTTCCTACTTTAGCTCCTCCATCTCCTTCTCTTCCACCACCACAAAAAGTATTACCTTCTCAATCGATTATCCTTTCGTCTTTGTCATCGTCTTCGGCTTCATCAGTTTACACTCCATCTAAGAGTACAATGAGTCATGGATCTATTTCTAGTGAAAATAATATTCCATATTTTGTTTAG 633 0.3602 MFGSAETERLDEIAKINSEGETSSQMGRKHFHGQIIGTTLNTVTPCAASVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGVISTLQQQVQSLQAELHAIRAEILKYKYREAASFISSQVSIPTNNANSQCLSQPLVLPTLAPPSPSLPPPQKVLPSQSIILSSLSSSSASSVYTPSKSTMSHGSISSENNIPYFV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03921 210 Coils Coil 97 117 - -
Trre9g03921 210 Pfam Lateral organ boundaries (LOB) domain 48 114 IPR004883 -
Trre9g03921 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 189 - -
Trre9g03921 210 ProSiteProfiles LOB domain profile. 18 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03921 Trre-Chr9 47278051 47279520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03921 37 133 AS2 family AT2G30340 58.065 2.56e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g03921 LOB 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03921 - - ccaj:109795340 239.58