Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03916 ATGATGAATACTCTAAATCAAATTTGGGAATGGGTTATGAAGCCAGAAGTGTGGACATTTATAGGCTGCGCATCAGCTGTTGTTGGACTTGTCTGTTATGCTCTCAGCTCTTCCTTCGACCATCTGTTTGGAAATTGGAATTTGCTTAAGAAAATTCTCTATAGCCTTTTCAGCTTCATCATCAGCCTCATCATGTTATTTGCATACAAATGGACACACTCAATAAGCCCTTGGTTCAAAGTTATAGCAAATATAGCAAAAGCTTTGGTAATAACACTCGGTGCACTCTATTCATTTTACCTCGAGAAAAAGGTGGAAGGAAAACCAGATGCATACAGTCTTATTTCATATGCTGCTTTTACTATTATGTCACTGAGTTTGTTGCTGCAAAGCCGGGGCAGGTTCGGAAAAGAGCTTATGGAATTTTTTGTCGCATGTTTAATTGTGGAATTCATGAAGATTAAACCGATATTCTTCCTTCTTGGAGCATGTTTCTATTACTCCATTTTTGCTGTTTTTTTCTCTCAAATTGAAGCTGAGTCACATTCAAATATCAATGTTACTGCCAATCAACCTTCAACAGAATTGGGCAGTAATATTGGTAATGAAGTTTCTACTAGTCTTTTAGATTCAAATATCATTGTTACTGTCAATCCACGTTCAACACAATTGGCCAGTACTATTGATAATGAAGATTCTACTAGTCTTTTAGATTCAAATATCAATGTTACTGCCGATCTACATTTACCAGAACTGGCCAGTACTAATAGTGGAAGTATTATGCTGGATTGTGAGAAGGCTGTGAAGGCACTTCGGGAAGAAACTTCAACTCTCATCGAAATGCTTATTGAGAAATTGAAAGATTATCTAAGTGGTGATTCTGGATTTAGTGGATTTAATGTGTCCGAGGACACCAACTTGATGATCATGGCCTTGCCAACTAAAACAATGGACAACATTCAGCGAATAGCAGACTTGATGGTTAGATCCGGGTTTAAGATGGAATTCTCGGACGTGTATAGCAGTTCCCGAAGTGAATGTTTGATCGAAAGCCTCTCAAGATTAGGGTTCGAGAAACTCAGCATTGAACACCTTCAGATGTTGTCGTGGAAAGAAATTGAAGATGAGACTGAAAGATGGATCAAAGCTATCACTGTGGCTTTCAAGATATTGTTCCCCGTTGAACGAAAACTCTGCAATAGGATTTACTTTGGGTTCGTCTCCACTGCTGATTTATTGTTTATGGATGTTTGTAGGGAATCCAGACAGCAGCTGCTGAATTTCGCAGAAGTTATTGCTCATGGAAGCGGATTAGCAGAACCGATGACTTCAATCATCAAGGTGAATGAGACAATGCGTGACCTAATAATTCCAGAGTTTAAGTATTTGTTTTGTGATCAATACATTGGATCCCTGCCAATGGAAAGATTCAAAACAATGGCAAGTTACATAAGATTTAGGGGAAAACGAAAGTCTGCGAAGTCTGTGGAGTCTAAAAATATGATCATTAAATCTATTGAGTATGAGAGAGAAATTCGTCGGAATCGGGAGGCCAAGGTTTATTTAGACTTAACTGGCATTTTACCTCACTTAGACTAA 1599 0.3827 MMNTLNQIWEWVMKPEVWTFIGCASAVVGLVCYALSSSFDHLFGNWNLLKKILYSLFSFIISLIMLFAYKWTHSISPWFKVIANIAKALVITLGALYSFYLEKKVEGKPDAYSLISYAAFTIMSLSLLLQSRGRFGKELMEFFVACLIVEFMKIKPIFFLLGACFYYSIFAVFFSQIEAESHSNINVTANQPSTELGSNIGNEVSTSLLDSNIIVTVNPRSTQLASTIDNEDSTSLLDSNINVTADLHLPELASTNSGSIMLDCEKAVKALREETSTLIEMLIEKLKDYLSGDSGFSGFNVSEDTNLMIMALPTKTMDNIQRIADLMVRSGFKMEFSDVYSSSRSECLIESLSRLGFEKLSIEHLQMLSWKEIEDETERWIKAITVAFKILFPVERKLCNRIYFGFVSTADLLFMDVCRESRQQLLNFAEVIAHGSGLAEPMTSIIKVNETMRDLIIPEFKYLFCDQYIGSLPMERFKTMASYIRFRGKRKSAKSVESKNMIIKSIEYEREIRRNREAKVYLDLTGILPHLD 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03916 532 Gene3D Exocyst complex component Exo70 231 485 - -
Trre9g03916 532 PANTHER EXOCYST COMPLEX PROTEIN EXO70 237 473 IPR004140 GO:0000145|GO:0006887
Trre9g03916 532 Pfam Exo70 exocyst complex subunit 378 467 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03916 532 SUPERFAMILY Cullin repeat-like 279 466 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03916 Trre-Chr9 47226099 47227697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03916 304 485 EXO70 exocyst subunit family AT5G58430 50.270 1.59e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03916 - - tpra:123922987 496.123