LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03904	ATGAGTATGGCACCATACGTGCATGGGATGGTCGATCAAGTTATGATGAATCCGTGGCATCAATTGTCTACTTGGTTAAAAAATGATGATATTACGCCATTTGAAACGACACATGGGATGTTGGTATGGGATTATGCTGCGCAAAACTCCGTAGTTAGCAACTTATTTAATGAGTCGATGGCAAATGATACTCGATTAGTTTCCGAGTTGTTGGTTGAGAAGTGTAAGGGAATGTTCAATGAATTTGAGTCATTGGTTGATGTTGGAGGAGGTACGGGGACCATGGCAAAGGCTCTTACCAAATCATTCCCAAAACTCGAGTGTACTGTATTTGATCTCCCACATGTTGTTGCTGGCTTGCAAGGAAGTGAGAAGCTAAGATATGTTGCTGGGGATATGTTTAAGGAAATTCCGCCAGCAGATGCAATTTTGTTGAAGTGGATATTGCATGACTGGAGTGACGAGGAATGTGTAAAGATATTAAAGAATTGTAAGGTTGCAATAGAAAAGAAAGGTAAAGAAGGGAAGGTAGTTATCATAGACATGGTTTTGGACAATGAGAAGGAAAACATTAATGAATCAGTTGAAACCCAACTCTTCTTTGACATGTTGATGATGGTATTACTCAAAGGAAAAGAGAGAAACAACAAAGAATGGGTTAAATTGATTTCCTCGGCCGGTTTTAGTGACTTCAAGATAACTCCAATTTTAGGATTACGGTCTGTGATTGAGATAAATCCATGA	744	0.3911	MSMAPYVHGMVDQVMMNPWHQLSTWLKNDDITPFETTHGMLVWDYAAQNSVVSNLFNESMANDTRLVSELLVEKCKGMFNEFESLVDVGGGTGTMAKALTKSFPKLECTVFDLPHVVAGLQGSEKLRYVAGDMFKEIPPADAILLKWILHDWSDEECVKILKNCKVAIEKKGKEGKVVIIDMVLDNEKENINESVETQLFFDMLMMVLLKGKERNNKEWVKLISSAGFSDFKITPILGLRSVIEINP	247

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g03904	247	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	2	244	IPR029063	-
	Trre9g03904	247	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	1	247	IPR016461	GO:0008168
	Trre9g03904	247	Pfam	O-methyltransferase domain	19	229	IPR001077	GO:0008171
	Trre9g03904	247	FunFam	O-methyltransferase ZRP4	1	247	-	-
	Trre9g03904	247	Gene3D	Vaccinia Virus protein VP39	1	247	IPR029063	-
	Trre9g03904	247	PANTHER	O-METHYLTRANSFERASE	5	230	IPR016461	GO:0008168
	Trre9g03904	247	CDD	AdoMet_MTases	85	184	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03904	Trre-Chr9	47119353	47123296	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03904	2	247	Monolignol Biosynthesis Gene Families	AT1G51990	35.341	1.72e-45	154

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03904	-		K16040	gmx:100808134	374.015

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