Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03900 ATGGAATCCCAAAATATAGAGCATGTTGCTTCTAATTTGCTCAAAGCTCAGAGCCACATATGGAATCATATTTTCAATTTCATAAATTCCATGTCACTTAAATGTGTAGTAGATTTAGGCATACCAGATATTATACACAATCATCAAAAACCCATGCCACTCTCAAAACTCATTTCTTCACTATCAATCCATCCTACAAAGAACCACAACATTTATCGCTTGATGCGAATCATGACTCACTCTGGCTTCTTTTCTCAACAAAATGTTACCGGGAATGAGTTAGAAATTGAGTATATGTTAACGGATGCATCTCGATTACTACTTAAGGACAATCCAATGAGTGTGAGACCATTCGTCCAAGCGATGCTCGATCCGGTTTTGACAAATCCGTGGCATCAATTGTCAACTTGGTTAAAAAATGACGATGCTACAACGTTTGAAACAACACACAAGATGCTTTTGTGGGATTTTGCTTCCCGTGACTCCAATTTTAGCAACTTATTTAATGAGTCCATGGCAAGTGATGCTCGATTAGTGATCAATTTGTTGATCGAGAACTATAGGGGAGCATTCATTGGATTAGAGTCACTGGTCGATGTTGGAGGAGGCACAGGGACCACAGCAAAGGCTCTTGCTAAATCATTCCCTCAATTGGAGTGCACGGTGTTCGATCTCCCACATGTTGTTGCTGGCTTGCAAGGTAGTGATAATCTAAAATATGTTGGTGGAGACATGTTTAAAGAAATTCCTCCGGCAGATGCTATCTTGATGAAGTGGATATTGCATAGTTGGAATGACGAGGAATGTGTGAAAATATTGAAGAAATGCAAGGAATCACTCAAAAAGAAAGGTAAAGAAGGAAAGCTAATTATCATAGAGATGGTGTTGGACATTGACCAGAAGGGAGACATTACTAAATCAACTGAAACACAACTCTTCTTTGATATGCTAATGATGGTAGTAGTCACTGGAAAAGAGAGAAATGAAAAAGAATGGAGTAATTTGATTTACTCTGCAGGTTTTAGTGGATATAAGATAACTCCAATTTTAGGCTTAAGGTCTGTGATTGAGATCTATCCCTAA 1083 0.3832 MESQNIEHVASNLLKAQSHIWNHIFNFINSMSLKCVVDLGIPDIIHNHQKPMPLSKLISSLSIHPTKNHNIYRLMRIMTHSGFFSQQNVTGNELEIEYMLTDASRLLLKDNPMSVRPFVQAMLDPVLTNPWHQLSTWLKNDDATTFETTHKMLLWDFASRDSNFSNLFNESMASDARLVINLLIENYRGAFIGLESLVDVGGGTGTTAKALAKSFPQLECTVFDLPHVVAGLQGSDNLKYVGGDMFKEIPPADAILMKWILHSWNDEECVKILKKCKESLKKKGKEGKLIIIEMVLDIDQKGDITKSTETQLFFDMLMMVVVTGKERNEKEWSNLIYSAGFSGYKITPILGLRSVIEIYP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03900 360 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Trre9g03900 360 SUPERFAMILY "Winged helix" DNA-binding domain 11 112 IPR036390 -
Trre9g03900 360 FunFam O-methyltransferase ZRP4 109 360 - -
Trre9g03900 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 358 IPR029063 -
Trre9g03900 360 Gene3D Vaccinia Virus protein VP39 108 360 IPR029063 -
Trre9g03900 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 360 IPR016461 GO:0008168
Trre9g03900 360 Pfam O-methyltransferase domain 131 342 IPR001077 GO:0008171
Trre9g03900 360 PANTHER O-METHYLTRANSFERASE 14 345 IPR016461 GO:0008168
Trre9g03900 360 Gene3D - 2 107 IPR036388 -
Trre9g03900 360 FunFam Coniferyl alcohol 9-O-methyltransferase 3 107 - -
Trre9g03900 360 PIRSF O-mtase 1 360 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03900 Trre-Chr9 47114387 47116167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03900 31 346 Monolignol Biosynthesis Gene Families AT5G54160 34.259 3.04e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03900 - K16040 gmx:100781008 494.197