Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03893 ATGGAATCTCATAGTTCTTCCAATTTGCTCAAAGCTCAAAGCCACATATGGAATCATATTTGCAACTTCATAAATTCCATCTCACTAAAATGTGTAGTTGATTTAGGCATACCAGATATCATACACAACTATGGAAAACCCATGCCACTCTCAAAACTCATTTCTTCATTACCAATTCATCCTTCAAAAAACCCATGCATCCCTCGCTTGATGCGAGTCATGACTCAGGCTGGCTTTTTCGTTGAACATAATGTTAACGATGATGAATTAGAAATTGAGTATATGCTTACCGATGAATCCATACTATTGCTTAAGGATCACCCAATGAGTGTGACACCCTTTTTGCAAGCAGTACTCCATCCAATTTTGGCAAACCCATGGCATGAATTGTCTGTTTGGTTAAAAACCGATGATCCTACAACATTTGAAACTGCACATGGAATGTTGATATGGGATTATGCGGCTCGTGAGCCTAACTTTAACAACTTATTCAATGATGCAATGGCGAGTGATGCTCGATTGGTTACTAGTGTGGTGATTGAGAAATGCACCGGAGTGTTTAACAGTTTGGACTCATTGGTTGATGTTGGAGGAGGCACCGGGACCATGGCAAAGGCACTTGCTAAATCATTCCCAAAAATGGAGTGTACTGTGTTTGATCTTCCACATGTTGTCGATGGCTTGCAAGGAAGTGATAACTTAAACTACGTTGGTGGAGACATGTTTAAGAAAATTCCTCCAGTTGATGCGATTTTGTTGAAGTGGATATTACATGATTGGAATGATGAAGAATGTGTAAGAATATTAAAAAATTGTAAGGATGCAATAGCGAAGAAAGGTAAACAAGGGAAGGTGATTATCATCGATATGGTGGTGGACAAGGGGAATGGTGAATCGGTTGAAACACAACTCTTCTTTGATATGCTCATGATGGTGTTGGCTTCTGGAAAAGAAAGGACCGAGAAAGAATGGATTAAATTGATTTCTTCGGCCGGTTTCAATGACTACAAGATAACTCCAATTTTAGGTCTAAGATCTCTCATTGAGATTTATCCTTAA 1059 0.39 MESHSSSNLLKAQSHIWNHICNFINSISLKCVVDLGIPDIIHNYGKPMPLSKLISSLPIHPSKNPCIPRLMRVMTQAGFFVEHNVNDDELEIEYMLTDESILLLKDHPMSVTPFLQAVLHPILANPWHELSVWLKTDDPTTFETAHGMLIWDYAAREPNFNNLFNDAMASDARLVTSVVIEKCTGVFNSLDSLVDVGGGTGTMAKALAKSFPKMECTVFDLPHVVDGLQGSDNLNYVGGDMFKKIPPVDAILLKWILHDWNDEECVRILKNCKDAIAKKGKQGKVIIIDMVVDKGNGESVETQLFFDMLMMVLASGKERTEKEWIKLISSAGFNDYKITPILGLRSLIEIYP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03893 352 FunFam O-methyltransferase ZRP4 105 352 - -
Trre9g03893 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Trre9g03893 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 350 IPR029063 -
Trre9g03893 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 352 IPR016461 GO:0008168
Trre9g03893 352 PANTHER O-METHYLTRANSFERASE 10 337 IPR016461 GO:0008168
Trre9g03893 352 SUPERFAMILY "Winged helix" DNA-binding domain 6 108 IPR036390 -
Trre9g03893 352 Gene3D Vaccinia Virus protein VP39 104 352 IPR029063 -
Trre9g03893 352 Pfam O-methyltransferase domain 127 334 IPR001077 GO:0008171
Trre9g03893 352 CDD AdoMet_MTases 193 281 - -
Trre9g03893 352 Pfam Dimerisation domain 28 75 IPR012967 GO:0046983
Trre9g03893 352 Gene3D - 1 103 IPR036388 -
Trre9g03893 352 FunFam Coniferyl alcohol 9-O-methyltransferase 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03893 Trre-Chr9 47084329 47085469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03893 27 338 Monolignol Biosynthesis Gene Families AT5G54160 32.609 3.38e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03893 - K16040 gmx:100781008 539.265