Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03890 ATGCCACTCTCAAAACTCATTTCTTCACTATCAATCCATCCTACAAAGAACCACAACATTTATCGCTTGATGCGAATCATGACTCACTCTGGCTTCTTTTCTCAACAAAATGTTACCGGGAATGAGTTAGAAATTGAGTATATGTTAACGGATGCATCTCGATTACTACTTAAGGACAATCCAATGAGTGTGAGACCATTCGTCCAAGCGATGCTCGATCCGGTTTTGACAAATCCGTGGCATCAATTGTCAACTTGGTTAAAAAATGACGATGCTACAACGTTTGAAACAACACACAAGATGCTTTTGTGGGATTTTGCTTCCCGTGACTCCAATTTTAGCAACTTATTTAATGAGTCCATGGCAAGTGATGCTCGATTAGTGATCAATTTGTTGATCGAGAACTATAGGGGAGCATTCATTGGATTAGAGTCACTGGTCGATGTTGGAGGAGGCACAGGGACCACAGCAAAGGCTCTTGCTAAATCATTCCCTCAATTGGAGTGCACGGTGTTCGATCTCCCACATGTTGTTGCTGGCTTGCAAGGTAGTGATAATCTAAAATATGTTGGTGGAGACATGTTTAAAGAAATTCCTCCGGCAGATGCTATCTTGATGAAGTGGATATTGCATAGTTGGAATGACGAGGAATGTGTGAAAATATTGAAGAAATGCAAGGAATCACTCAAAAAGAAAGGTAAAGAAGGAAAGCTAATTATCATAGAGATGGTGTTGGACATTGACCAGAAGGGAGACATTACTAAATCAACTGAAACACAACTCTTCTTTGATATGCTAATGATGGTAGTAGTCACTGGAAAAGAGAGAAATGAAAAAGAATGGAGTAATTTGATTTACTCTGCAGGTTTTAGTGGATATAAGATAACTCCAATTTTAGGCTTAAGGTCTGTGATTGAGATCTATCCCTAA 930 0.3925 MPLSKLISSLSIHPTKNHNIYRLMRIMTHSGFFSQQNVTGNELEIEYMLTDASRLLLKDNPMSVRPFVQAMLDPVLTNPWHQLSTWLKNDDATTFETTHKMLLWDFASRDSNFSNLFNESMASDARLVINLLIENYRGAFIGLESLVDVGGGTGTTAKALAKSFPQLECTVFDLPHVVAGLQGSDNLKYVGGDMFKEIPPADAILMKWILHSWNDEECVKILKKCKESLKKKGKEGKLIIIEMVLDIDQKGDITKSTETQLFFDMLMMVVVTGKERNEKEWSNLIYSAGFSGYKITPILGLRSVIEIYP 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03890 309 Gene3D Vaccinia Virus protein VP39 57 309 IPR029063 -
Trre9g03890 309 FunFam O-methyltransferase ZRP4 58 309 - -
Trre9g03890 309 Gene3D - 1 56 IPR036388 -
Trre9g03890 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 61 307 IPR029063 -
Trre9g03890 309 Pfam O-methyltransferase domain 80 291 IPR001077 GO:0008171
Trre9g03890 309 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 309 IPR016461 GO:0008168
Trre9g03890 309 PIRSF O-mtase 1 309 IPR016461 GO:0008168
Trre9g03890 309 SUPERFAMILY "Winged helix" DNA-binding domain 1 61 IPR036390 -
Trre9g03890 309 PANTHER O-METHYLTRANSFERASE 3 294 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03890 Trre-Chr9 47070447 47072910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03890 47 309 Monolignol Biosynthesis Gene Families AT1G51990 35.955 1.38e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03890 - K16040 gmx:100781008 415.616