Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g03888 | ATGTCACTAAAATGTGTAGTTGATTTAGGCATACCAGATATCATACACAAATATGGCAAACCCATGCCACTCTCAAAACTCATTTCTTCATTACCAATTCATCCTTCAAAAACTTGTTTCATCTATCGCTTGATGCGAATCATGACTCATTCAGGTTTTTTCTCTCAACAAAATGTTATAGAGAACGAGCTAGAAGTTGAGTATATGTTAACTGATGCATCAATATTACTACTTAAGGATACTCCAATGAGCATGACACCATACGTGCAAGCAATGCTCGATCCAATTTTAACGAATCCGTGGCATCAGTTATCTACTTGGTTTAAAAGTGATGATCCTACAACATTTAAAACTACAAATGGGATGTTGATATGGGAATATGCGGCGCATGAGCCCAACTTTAACAATTTATTCAATAATGCAATGGCAAGTGATGCTCGATTGGTCACTAGTGTGGTGATTGAAAAATGCGCGGGAGTGTTCAACGATTTGGAGTCATTGGTTGATGTTGGAGGAGGCACCGGGACCATGGCAAAGGCGCTTGCTAAATCATTCCCAAAAATGAATTGCATTGTATTTGATCTCCCACATGTTGTTGCTGGCTTTCAAGGAAGTGAGAATCTAAAATATGTTGGTGGAGACATGTTTAAGGAAATTCCTCCAGCAGATGTCATTTTGTTGAAGTGGATATTGCATGACTGGAATGACGAGAAATGTGTGAAAATATTGAAGAAATGCAAGGAATCACTCAAACAAAAAGGAAAAGAAGGAAAGGTGATTATCATAGACATGGTGTTGGACATTGACATGAAGGGAGACAATGACATTACTAAATCAATTGAAACACAACTCTTCTTTGATATGCTGATGATGGTATTGGTCAATGGAAAAGAGAGAAACGAAAAAGAATGGAGTATTTAG | 921 | 0.3757 | MSLKCVVDLGIPDIIHKYGKPMPLSKLISSLPIHPSKTCFIYRLMRIMTHSGFFSQQNVIENELEVEYMLTDASILLLKDTPMSMTPYVQAMLDPILTNPWHQLSTWFKSDDPTTFKTTNGMLIWEYAAHEPNFNNLFNNAMASDARLVTSVVIEKCAGVFNDLESLVDVGGGTGTMAKALAKSFPKMNCIVFDLPHVVAGFQGSENLKYVGGDMFKEIPPADVILLKWILHDWNDEKCVKILKKCKESLKQKGKEGKVIIIDMVLDIDMKGDNDITKSIETQLFFDMLMMVLVNGKERNEKEWSI | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g03888 | 306 | CDD | AdoMet_MTases | 167 | 255 | - | - | |
| Trre9g03888 | 306 | FunFam | O-methyltransferase ZRP4 | 79 | 306 | - | - | |
| Trre9g03888 | 306 | PIRSF | O-mtase | 1 | 306 | IPR016461 | GO:0008168 | |
| Trre9g03888 | 306 | Gene3D | - | 1 | 77 | IPR036388 | - | |
| Trre9g03888 | 306 | PANTHER | O-METHYLTRANSFERASE | 1 | 305 | IPR016461 | GO:0008168 | |
| Trre9g03888 | 306 | Pfam | O-methyltransferase domain | 101 | 305 | IPR001077 | GO:0008171 | |
| Trre9g03888 | 306 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 82 | 304 | IPR029063 | - | |
| Trre9g03888 | 306 | Gene3D | Vaccinia Virus protein VP39 | 78 | 306 | IPR029063 | - | |
| Trre9g03888 | 306 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 81 | IPR036390 | - | |
| Trre9g03888 | 306 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 306 | IPR016461 | GO:0008168 | |
| Trre9g03888 | 306 | Pfam | Dimerisation domain | 1 | 48 | IPR012967 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g03888 | Trre-Chr9 | 47062017 | 47063502 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre9g03888 | 1 | 304 | Monolignol Biosynthesis Gene Families | AT5G54160 | 33.657 | 3.13e-48 | 163 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g03888 | - | K16040 | gmx:100781008 | 474.937 |