Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03880 ATGCTTTCAGGGGACATACCTCCAAATCAAACCATTTACATTAAGAATCTCAATGAAAAGATCAAGAAAGACGAGTTGAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGGAGGATTTTGGACATTATTGCTCTAAAGACACCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTAACCGCTGCCAGTAATGCTGTGCGACAGATGCAAAACTTCCCGTTTTACGAAAAACCTATGAGAATTCAATATGCAAAATCAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTTTGTTCCAAGAGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAGAAAGAGGAATGATGAATCAAAACAATCTGCCGTGCCTAATGGAACACATGGTGCAAGTAATGGTGGTCCAACAGCCTCATTTCGCCCAGGGTCTAATGCCCAAGAAGCAGTTGCTCCTAACAATATTTTATTCATAGAGAATTTGCCTTATGAAACTACCGGCAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATTGATGCAAAGCCAGGTATCGCGTTCGTAGATTTCGAAGACGATGTACAATCATCCATGGCAATGCAGGCTCTTCAAGGATTCAAAATTACCCCTCAAAATCCCATGAGTATAAACTTTGCTAAGAAGTAA 696 0.4009 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKSKSDCIAKEEGSFVPREKKKKQEEKAERKRNDESKQSAVPNGTHGASNGGPTASFRPGSNAQEAVAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIDAKPGIAFVDFEDDVQSSMAMQALQGFKITPQNPMSINFAKK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03880 231 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 90 - -
Trre9g03880 231 SUPERFAMILY RNA-binding domain, RBD 8 218 IPR035979 GO:0003676
Trre9g03880 231 CDD RRM1_U1A_like 11 88 - -
Trre9g03880 231 MobiDBLite consensus disorder prediction 99 123 - -
Trre9g03880 231 Coils Coil 104 124 - -
Trre9g03880 231 Gene3D - 146 231 IPR012677 -
Trre9g03880 231 SMART rrm1_1 158 227 IPR000504 GO:0003723
Trre9g03880 231 SMART rrm1_1 11 85 IPR000504 GO:0003723
Trre9g03880 231 MobiDBLite consensus disorder prediction 99 148 - -
Trre9g03880 231 Gene3D - 4 118 IPR012677 -
Trre9g03880 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Trre9g03880 231 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Trre9g03880 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 231 IPR000504 GO:0003723
Trre9g03880 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 218 IPR000504 GO:0003723
Trre9g03880 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Trre9g03880 231 CDD RRM2_U1A_like 155 226 - -
Trre9g03880 231 FunFam U2 small nuclear ribonucleoprotein B'' 148 231 - -
Trre9g03880 231 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03880 Trre-Chr9 46939453 46944097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03880 3 231 Eukaryotic Initiation Factors Gene Family AT1G71770 22.979 6.41e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03880 K11094 - gmx:100805822 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03880 9 46939453 46944097 Trre9g03880 9 46939453 46944097 ECH