Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03874 ATGACATCTTCATCAAGTAGCTTAGAAAACCATAACAATAACAATAACAATAACAATTCTTTAAACAATTTTACCTTCTCATCGTCACAACCTTTTATGACTACTTCTTTCTCTGACCTTTTAGCTTCTACTATTGAAGAGAAATCAAAGGGTGAAAGAAATGGTTATGGTGGTGGTGGAAATGGTGGGGGTGTGCCAAAATTTAAGTCTACACCCCCTCCTTCTTTGCCTTTGTCACCTCCCCCTGCTTCTCCTTCTTCTTACTTTTCTATTCCTTTTGGTTTGAGTCCTGCTGAGTTACTTGATTCACCTGTTTTGCTTAACTCTTCCAATATTTTGCCATCTCCTACAACTGGTTCTTTTGCTTCTCAAAGGTACAATTGGTTGAACAATTCTGAAGAGAATCAGCAAATTGCAAATGAAACTGACAAAAGCTTCTCAAATTTCTCTTTTCAAAACCAACAAGGACCTGCTGTTACTGGATCCAATACTACTTTTCAATCATCAACAGTAGTTGGAGTTGAACAGCAGCAACCATGGAGTTATCAAGAAAACACAAATCAGAATGTTTTTTCACCCGAAACCAATTTGATCCAAGCTGAAAACAATAACTCTTCAATGCAGAGTTTTTCACCCGAAACCAATATGATTCAAGCTGAAAACAACAACACTTCAATGCAGAGTTTTTCTCCTGAGATTCCTAATGTTCAAACCATCACAATCAACAATGGACTCCAATTAGACCATAACACCAATTACACAATCTTAAGCCGAAGATCGGATGATGGATACAATTGGCGAAAATATGGACAAAAACAAGTGAGAGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACTTACCCTAATTGTCCTACAAAGAAGAAAGTTGAGAGATCAATTGAAGGACAAATTACTGAGATAGTTTATAAGGGTAATCATAATCATCCTAAGCCTCAAGTTGGTGTTAGGAAAAACTCGTCATCATCGTCTTCTAATTCTCATGTGATTGCTCCTGTTAATCCAAATGGTAATGAAATACATGATCATTCATATGGTTCACATGGTAATGGACAAATGGATTCGGTGGCTACTCCCGAGAATTCGTCGTTATCAATAGGAGGTGATGACGATTTTGAGCAGAGTTCTCTTCAGAGGTCTAGATCTTTTGGTGCTGATGAAGTTGTTGAAGAGGAACCTGAACCTAAACGATGGAGAAATGAAGTTGAAAATGAGGGTATAGTCCTTGGACACAGAACAGTGAGAGAGCCTAGAGTTGTTGTTCAGACAACAAGTGACATTGATATCTTGGATGATGGTTACAAATGGAGGAAATATGGACAGAAAGTTGTTAAGGGCAATCCAAATCCAAGGAGTTACTACAAATGTACACACCCCGGTTGTCCTGTAAGAAAACATGTTGAACGTGCCGCGCATGATATAAAGGCAGTGATCACAACTTATGAAGGAAAACACACACATGAAGTTCCTGCAGCTCGTGGAAGTGGAAGCAATTCTATGAACAGACCAACTCCAAACAACCCTATAAATCAATCCAATGCTCCCTATGCTATAAGGCCTTTACAGATGCAACTGCCACAAGGGCAAGTACGTCCTTTCCATCCTGATTTGCTGCTTGGTCAAGGAAGTTATGGTATCTCAGGATTTAGGAATCAAATGATGCCTTACATGAATCATCAACAACAGCAGCAGCAGCAACAACAGCAACACTTTTCTGAAAATGGTTTTTCCTCATTGTGCTGA 1764 0.3878 MTSSSSSLENHNNNNNNNNSLNNFTFSSSQPFMTTSFSDLLASTIEEKSKGERNGYGGGGNGGGVPKFKSTPPPSLPLSPPPASPSSYFSIPFGLSPAELLDSPVLLNSSNILPSPTTGSFASQRYNWLNNSEENQQIANETDKSFSNFSFQNQQGPAVTGSNTTFQSSTVVGVEQQQPWSYQENTNQNVFSPETNLIQAENNNSSMQSFSPETNMIQAENNNTSMQSFSPEIPNVQTITINNGLQLDHNTNYTILSRRSDDGYNWRKYGQKQVRGSENPRSYYKCTYPNCPTKKKVERSIEGQITEIVYKGNHNHPKPQVGVRKNSSSSSSNSHVIAPVNPNGNEIHDHSYGSHGNGQMDSVATPENSSLSIGGDDDFEQSSLQRSRSFGADEVVEEEPEPKRWRNEVENEGIVLGHRTVREPRVVVQTTSDIDILDDGYKWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERAAHDIKAVITTYEGKHTHEVPAARGSGSNSMNRPTPNNPINQSNAPYAIRPLQMQLPQGQVRPFHPDLLLGQGSYGISGFRNQMMPYMNHQQQQQQQQQQHFSENGFSSLC 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03874 587 MobiDBLite consensus disorder prediction 50 84 - -
Trre9g03874 587 FunFam WRKY transcription factor 33 424 490 - -
Trre9g03874 587 MobiDBLite consensus disorder prediction 565 587 - -
Trre9g03874 587 ProSiteProfiles WRKY domain profile. 432 497 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 MobiDBLite consensus disorder prediction 310 404 - -
Trre9g03874 587 Gene3D WRKY domain 249 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 MobiDBLite consensus disorder prediction 70 84 - -
Trre9g03874 587 MobiDBLite consensus disorder prediction 499 515 - -
Trre9g03874 587 SMART WRKY_cls 437 496 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 SMART WRKY_cls 260 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 SUPERFAMILY WRKY DNA-binding domain 429 497 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 Gene3D WRKY domain 424 490 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 FunFam WRKY transcription factor 249 320 - -
Trre9g03874 587 ProSiteProfiles WRKY domain profile. 261 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 MobiDBLite consensus disorder prediction 347 389 - -
Trre9g03874 587 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 102 564 IPR044810 GO:0003700
Trre9g03874 587 Pfam WRKY DNA -binding domain 261 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 Pfam WRKY DNA -binding domain 438 495 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03874 587 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g03874 587 MobiDBLite consensus disorder prediction 320 340 - -
Trre9g03874 587 MobiDBLite consensus disorder prediction 495 515 - -
Trre9g03874 587 SUPERFAMILY WRKY DNA-binding domain 258 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03874 Trre-Chr9 46910687 46914299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03874 258 530 WRKY Transcription Factor Family AT2G38470 62.094 5.80e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03874 WRKY 3.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03874 K13424 - gmx:100127385 639.802