Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03873 ATGACATCTTCATCAAGTAGCTTAGAAAACCATAACAATAACAATAACAATAACAATTCTTTAAACAATTTTACCTTCTCATCGTCACAACCTTTTATGACTACTTCTTTCTCTGACCTTTTAGCTTCTACTATTGAAGAGAAATCAAAGGGTGAAAGAAATGGTTATGGTGGTGGTGGAAATGGTGGGGGTGTGCCAAAATTTAAGTCTACACCCCCTCCTTCTTTGCCTTTGTCACCTCCCCCTGCTTCTCCTTCTTCTTACTTTTCTATTCCTTTTGGTTTGAGTCCTGCTGAGTTACTTGATTCACCTGTTTTGCTTAACTCTTCCAATATTTTGCCATCTCCTACAACTGGTTCTTTTGCTTCTCAAAGGTACAATTGGTTGAACAATTCTGAAGAGAATCAGCAAATTGCAAATGAAACTGACAAAAGCTTCTCAAATTTCTCTTTTCAAAACCAACAAGGACCTGCTGTTACTGGATCCAATACTACTTTTCAATCATCAACAGTAGTTGGAGTTGAACAGCAGCAACCATGGAGTTATCAAGAAAACACAAATCAGAATAGTTTTTCACCCGAAACCAATATGATTCAAGCTGAAAACAACAACACTTCAATGCAGAGTTTTTCTCCTGAGATTCCTAATGTTCAAACCATCACAATCAACAATGGACTCCAATTAGACCATAACACCAATTACACAATCTTAAGCCGAAGATCGGATGATGGATACAATTGGCGAAAATATGGACAAAAACAAGTGAGAGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACTTACCCTAATTGTCCTACAAAGAAGAAAGTTGAGAGATCAATTGAAGGACAAATTACTGAGATAGTTTATAAGGGTAATCATAATCATCCTAAGCCTCAAGTTGGTGTTAGGAAAAACTCGTCATCATCGTCTTCTAATTCTCATGTGATTGCTCCTGTTAATCCAAATGGTAATGAAATACATGATCATTCATATGGTTCACATGGTAATGGACAAATGGATTCGGTGGCTACTCCCGAGAATTCGTCGTTATCAATAGGAGGTGATGACGATTTTGAGCAGAGTTCTCTTCAGAGGTCTAGATCTTTTGGTGCTGATGAAGTTGTTGAAGAGGAACCTGAACCTAAACGATGGAGAAATGAAGTTGAAAATGAGGGTATAGTCCTTGGACACAGAACAGTGAGAGAGCCTAGAGTTGTTGTTCAGACAACAAGTGACATTGATATCTTGGATGATGGTTACAAATGGAGGAAATATGGACAGAAAGTTGTTAAGGGCAATCCAAATCCAAGGAGTTACTACAAATGTACACACCCCGGTTGTCCTGTAAGAAAACATGTTGAACGTGCCGCGCATGATATAAAGGCAGTGATCACAACTTATGAAGGAAAACACACACATGAAGTTCCTGCAGCTCGTGGAAGTGGAAGCAATTCTATGAACAGACCAACTCCAAACAACCCTATAAATCAATCCAATGCTCCCTATGCTATAAGGCCTTTACAGATGCAACTGCCACAAGGGCAAGTACGTCCTTTCCATCCTGATTTGCTGCTTGGTCAAGGAAGTTATGGTATCTCAGGATTTAGGAATCAAATGATGCCTTACATGAATCATCAACAACAGCAGCAGCAGCAACAACAGCAACACTTTTCTGAAAATGGTTTTTCCTCATTGTGCTGA 1707 0.3884 MTSSSSSLENHNNNNNNNNSLNNFTFSSSQPFMTTSFSDLLASTIEEKSKGERNGYGGGGNGGGVPKFKSTPPPSLPLSPPPASPSSYFSIPFGLSPAELLDSPVLLNSSNILPSPTTGSFASQRYNWLNNSEENQQIANETDKSFSNFSFQNQQGPAVTGSNTTFQSSTVVGVEQQQPWSYQENTNQNSFSPETNMIQAENNNTSMQSFSPEIPNVQTITINNGLQLDHNTNYTILSRRSDDGYNWRKYGQKQVRGSENPRSYYKCTYPNCPTKKKVERSIEGQITEIVYKGNHNHPKPQVGVRKNSSSSSSNSHVIAPVNPNGNEIHDHSYGSHGNGQMDSVATPENSSLSIGGDDDFEQSSLQRSRSFGADEVVEEEPEPKRWRNEVENEGIVLGHRTVREPRVVVQTTSDIDILDDGYKWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERAAHDIKAVITTYEGKHTHEVPAARGSGSNSMNRPTPNNPINQSNAPYAIRPLQMQLPQGQVRPFHPDLLLGQGSYGISGFRNQMMPYMNHQQQQQQQQQQHFSENGFSSLC 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03873 568 MobiDBLite consensus disorder prediction 50 84 - -
Trre9g03873 568 Gene3D WRKY domain 405 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 ProSiteProfiles WRKY domain profile. 413 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 MobiDBLite consensus disorder prediction 301 321 - -
Trre9g03873 568 SUPERFAMILY WRKY DNA-binding domain 410 478 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 Pfam WRKY DNA -binding domain 419 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 SUPERFAMILY WRKY DNA-binding domain 239 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 MobiDBLite consensus disorder prediction 476 497 - -
Trre9g03873 568 MobiDBLite consensus disorder prediction 480 497 - -
Trre9g03873 568 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 545 IPR044810 GO:0003700
Trre9g03873 568 MobiDBLite consensus disorder prediction 291 385 - -
Trre9g03873 568 MobiDBLite consensus disorder prediction 70 84 - -
Trre9g03873 568 ProSiteProfiles WRKY domain profile. 242 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 SMART WRKY_cls 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 SMART WRKY_cls 418 477 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g03873 568 MobiDBLite consensus disorder prediction 546 568 - -
Trre9g03873 568 Gene3D WRKY domain 230 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03873 568 MobiDBLite consensus disorder prediction 328 370 - -
Trre9g03873 568 FunFam WRKY transcription factor 230 301 - -
Trre9g03873 568 FunFam WRKY transcription factor 33 405 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03873 Trre-Chr9 46910687 46914299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03873 65 511 WRKY Transcription Factor Family AT2G38470 48.796 5.06e-106 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03873 WRKY 3.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03873 K13424 - gmx:100127385 647.891