Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03868 ATGAAGCACATTATAATCAAAATTCAAAGATGGCTTATGCATACAAATGTATGGAGAGTTGTCGGCTTCACTTCAGCGGTTGTTGGATTGGTTTGTTATGCTCTCAGCTCTTCCTTCAACCATCTATTTGGAAATTGGAATTTGTGGAAGATTATTCTTTACACGATTTTCAGCTTCATCATCAGCCTCATGATATTGTATGCAAATTTATGGAACCGCTCGAGAAGTCTCCGCTTCAAAGCTCATACGGCATTTCTGGTATTGACAATCACATCTGTCTATTCCTTTTTCTTTGATAAAGTAGTGAATGGAAAACCAGATGCCTATAGCTTGATTTCATGCGCCGCTTTTGCTATCATGTCAATGAGCTTGTCGAGACAATCTCAGTGCGGATTCGAAGTAGATCTTCTTTACTTTTTTCTCGGATGTCTAATTGTTTTACTCATGAAGATTAACTTGCCGTTAGTCTTTGTTGGAGCAGGTTTTAGCTATTCTCTTATTATTATTCGTTCTTATTTTTCTTCCATAAATAACATAGTCGAAAACGAGTATTTTGGAATCCAAGGTGAAAATTCAGTAGTCGTTGAAATGGATTCACTACTAAGGCCTAGTAATGATTTTTCTGTAATGATGCAAAAACTTACAACTTGCACTACTGCAATTCAACAGGAAATTTCATATCTCATTAACAGGCATATAAAAGAACACATTCAAAACTGTAGTGAATCATCTCCCAATTTCGTGATGGATACTCTTCTGTTAGTAAAGATGCATAATCTTCATGAAATTGTGAAGTTGATGATAGGTGCTGGATATGAGAAAGAATGTTCTGGTGTTTACAGTAGTTGGCGGAAGGTATTTTTGCAAGAATGTGTGATAAATAAAGTATTTTGGTTGCCGGAGGCAAAGATCAACACCGAGAATGAGCTTATAAGGGAAGACTATTTAGATACCATGTTTGTAAGATGGATGACTGCTTCAGATGTAGCTTTGACAATCTTGTTTCCCATAGAACGGAAACTCTGTGATCGGGTCTTCTCGGGGTTCTCCACCGCTGGTTCTAATTGTTTCATTGAGGTTTGCCAAGAAGCAACTTTTCAGCTGCTGAATTTGGCAAACACAGTTAGTTCTGGTAGCCCTTCAAAGTGGCGTTTGTTCAAAATGCTCGACATATTTAAGAAATTACATTGTCTTATTCCAAAATTCCAATCTTTGTTCCCAGATTCAACATTACTGTACCAAGTCATCACAGTTCAGAATAGATTAGGAGAAGCTAGCAGAGACCTTTTCATAGAAATGCATAATTTTATTTTCAGAGTCCCAACAGCAAATCTAGTGCATTCATCTTATGGTCAACTTCATGAAATGACTATCAATGTCATGAGCTATGTGACTTCTGCTTGCAGGTCACAGACGACGCTGGAACAAATTTTACAAGAATACTCCAAGGTTGACAATGAAGTGGAAGCATCTTCTTTCTTTTTGAAGCATATGCAGAAGATAATAATGATATTACAAAAAAAGTTAATAGTCATGTCCAAAAAGTACAAGGACCCGCTATTGCGCCATATTTTCATGCTAAGTAATAGGTCGCACATAGAAGCTACGAACAAGATCTGGGAATTGGAAACAATTTTGGGCAATGAGTGGTTTCAAAATAACAAAGAAAAAATCCAAAAAAACCTTGAGTTTTATAAACGAAACTCGTGGAATGAAGTGTTAGAGTTTCTGAAGCTAGACAACAATGAGAAGTTGACACTCAATGACAACATTACAGAAGAGGTTTTGAAAGAGAAGATTCATTTGTTCAACAGTCACTTTGAAGATATATGCAGAGTTCAGTCTGCATGGTCTGTATATGACAATAAGCTAAGAGAAGAAATAATATCATCTGTGAGAAACATCTTATTGCCAGCATATGGAATCTTTATTGGGAGGCTCCAGGATATTCTTGGTAACCAAGCTTATAAGTACATTAAATATGGAATGTTTGAGATTCAAGATTTACTCAACCATTTGTTTCTTGGAACAAAATATATATGA 2043 0.3617 MKHIIIKIQRWLMHTNVWRVVGFTSAVVGLVCYALSSSFNHLFGNWNLWKIILYTIFSFIISLMILYANLWNRSRSLRFKAHTAFLVLTITSVYSFFFDKVVNGKPDAYSLISCAAFAIMSMSLSRQSQCGFEVDLLYFFLGCLIVLLMKINLPLVFVGAGFSYSLIIIRSYFSSINNIVENEYFGIQGENSVVVEMDSLLRPSNDFSVMMQKLTTCTTAIQQEISYLINRHIKEHIQNCSESSPNFVMDTLLLVKMHNLHEIVKLMIGAGYEKECSGVYSSWRKVFLQECVINKVFWLPEAKINTENELIREDYLDTMFVRWMTASDVALTILFPIERKLCDRVFSGFSTAGSNCFIEVCQEATFQLLNLANTVSSGSPSKWRLFKMLDIFKKLHCLIPKFQSLFPDSTLLYQVITVQNRLGEASRDLFIEMHNFIFRVPTANLVHSSYGQLHEMTINVMSYVTSACRSQTTLEQILQEYSKVDNEVEASSFFLKHMQKIIMILQKKLIVMSKKYKDPLLRHIFMLSNRSHIEATNKIWELETILGNEWFQNNKEKIQKNLEFYKRNSWNEVLEFLKLDNNEKLTLNDNITEEVLKEKIHLFNSHFEDICRVQSAWSVYDNKLREEIISSVRNILLPAYGIFIGRLQDILGNQAYKYIKYGMFEIQDLLNHLFLGTKYI 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03868 680 SUPERFAMILY Cullin repeat-like 214 674 IPR016159 -
Trre9g03868 680 Coils Coil 548 568 - -
Trre9g03868 680 Gene3D Exocyst complex component Exo70 172 679 - -
Trre9g03868 680 PANTHER EXOCYST COMPLEX PROTEIN EXO70 208 675 IPR004140 GO:0000145|GO:0006887
Trre9g03868 680 Pfam Exo70 exocyst complex subunit 322 671 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03868 Trre-Chr9 46878673 46880715 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03868 246 677 EXO70 exocyst subunit family AT5G58430 40.807 1.18e-99 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03868 - - mtr:25490887 656.366