Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03863 ATGATTCAACGTGTCCAACAAGATCAAGATTCCACCGCAGTCATTATTCATGTCCCTGAAGAATATTCAGAAGAATTAAGCAATACTATTGCTGATAATTATTATGATATTCCGGCGGATAGTGTTTCCCTGTTAGAAAACACGGATCTTGGACTTCAAGAAGAGTCGTTAGTCATGGTTAAACAAAATGAGGGCATATCAGAAACTAGAGTTGTTGTTCAGACAACAAATAACATTGATATGCTTCATAATGGTGGTTACAGATGGAGGAAATATGGACAAAAAATTTCCGATGGAAATCCAAATCCAAGGATTTATTACAAATGCACCTACCCTAATTGTCTTACAATGAAGAAAGTTGAGAGATCAATTGACGGACAAGTTACCGAGATAATTTATAAGGGTACTCATAATCATCCTAAGCCTCATGCTGGTGCTAGGAGAAACTCATCATCACCTCAGAATTCATCAATAAAAATAGGAAGTGATGTTGATTTTGAGCACAGTTCTCTTCAGAGGTTTAGATCTGCTGGTGCTGATGAAAAGCAACCTGATCCTAAAAGATGGAGAAATAAAGGTGAAAATGAGGATATAGTTCCTGAAAACAAAACAGTGAGAGAACCTAGAGTTGCTCAGACAACAAGTGACATTGATATCCTTTATGATGGTGGTGGTTATAGATGGTGGAAATATGGACAGAAAGTTACCAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGTACACACCTAGGTTGTCCTGTGAAGAAACATGTTGAACGTGCCTCACATGATGTAAAGGCAGTTATCACAACTTATGAGGGGAAACACAACCATGATATCCCTGCCGCTCGTTGA 858 0.3811 MIQRVQQDQDSTAVIIHVPEEYSEELSNTIADNYYDIPADSVSLLENTDLGLQEESLVMVKQNEGISETRVVVQTTNNIDMLHNGGYRWRKYGQKISDGNPNPRIYYKCTYPNCLTMKKVERSIDGQVTEIIYKGTHNHPKPHAGARRNSSSPQNSSIKIGSDVDFEHSSLQRFRSAGADEKQPDPKRWRNKGENEDIVPENKTVREPRVAQTTSDIDILYDGGGYRWWKYGQKVTKGNPNPRSYYKCTHLGCPVKKHVERASHDVKAVITTYEGKHNHDIPAAR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03863 285 SMART WRKY_cls 220 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 SMART WRKY_cls 83 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 MobiDBLite consensus disorder prediction 145 163 - -
Trre9g03863 285 ProSiteProfiles WRKY domain profile. 217 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 ProSiteProfiles WRKY domain profile. 78 142 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 MobiDBLite consensus disorder prediction 135 210 - -
Trre9g03863 285 Pfam WRKY DNA -binding domain 225 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 Pfam WRKY DNA -binding domain 86 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 FunFam WRKY transcription factor 202 283 - -
Trre9g03863 285 MobiDBLite consensus disorder prediction 166 204 - -
Trre9g03863 285 SUPERFAMILY WRKY DNA-binding domain 82 142 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 SUPERFAMILY WRKY DNA-binding domain 220 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 FunFam WRKY transcription factor 67 143 - -
Trre9g03863 285 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 123 IPR044810 GO:0003700
Trre9g03863 285 Gene3D WRKY domain 67 143 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03863 285 Gene3D WRKY domain 203 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03863 Trre-Chr9 46871221 46872850 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03863 86 285 WRKY Transcription Factor Family AT2G38470 54.918 2.24e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03863 WRKY 6.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03863 K13424 - zju:107411616 281.567