Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03860 ATGCTTCGTTTTTATTTGAACTCCCCAATAGATCGACGCGTACAACAAGATCAAGATTCCGCACTCATTATTCAGATCCCTGAAGAATATTCAGAAGAGTTAACCAATACTAGTGCTGATTATTATGCTATTCCGGTGGATGCCGATCAAGTCAATTCTGATAGTGTTGCCCCGCCGGAAAACAGTGATCTTGGAGCTTTGGTCTATCAAATCAGTTCGCCTTCACAACAAAATGAGGGGATATCAGTACCTAGAAGCAGAACAGTGAGAGAACCTGGAGTTGTTGTTCAGACAACAAGTGACATTGTTACTCTGGATGATGGTTACAAATGGAGGAAATGTAGGCAGAAACTTGTCCAAAGGAAGTCCATATCAAGGAGTTACTACAGATGTACATACCCAGGTTGTCCTGTGAGGAAACGTGTTGACCGTGCCACACAGGATATAATGTATGTGATGTTAGCTTATGACGGGATTCACAACCATGATGTCCCTGCAGCTCGTCGAAGTAGAAGAAATTCTGTGAACAAACCAGTGTAG 540 0.4259 MLRFYLNSPIDRRVQQDQDSALIIQIPEEYSEELTNTSADYYAIPVDADQVNSDSVAPPENSDLGALVYQISSPSQQNEGISVPRSRTVREPGVVVQTTSDIVTLDDGYKWRKCRQKLVQRKSISRSYYRCTYPGCPVRKRVDRATQDIMYVMLAYDGIHNHDVPAARRSRRNSVNKPV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03860 179 SMART WRKY_cls 105 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03860 179 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 170 IPR044810 GO:0003700
Trre9g03860 179 Pfam WRKY DNA -binding domain 106 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03860 179 SUPERFAMILY WRKY DNA-binding domain 97 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03860 179 Gene3D WRKY domain 90 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03860 179 ProSiteProfiles WRKY domain profile. 100 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03860 Trre-Chr9 46854911 46855992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03860 86 170 WRKY Transcription Factor Family AT2G38470 63.529 1.79e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03860 WRKY 1.5e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03860 K13424 - tcc:18591046 144.436