Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03858 ATGAATGAGCTTAAGAAAAACAATTTGAATATCGGTAAGATGCTTTTGCAGAAGGTGAAAGAAGACTTGTTAATAAATAAGTTATTAGCACTGAGAAAGATGGGATTTCAGGACTACGTGATTGAAAGATGGATTAAGACTTCAAAGGTTGCTCTTAAAATACTATTTCCGAGTGAGCGTCAACTATACGACCGTGTCTTCTCAGAATCCAACTCGTCTAATCTCTATTTCTCGAGGACTTGTAGTGGAGCGATGATTCAGCTGCTGAATTTTTCTGTTGCGTTTGCAAATAGAAGCCCTTCAGCGTGGCGTTTGTTTAAAATCCTCAACTTGTTTGAGACGTTGTGTGATTTGATTCATGACTTTGAATCGTTATTTCTTGATCGGTTGGTGAGCGAAGCAATACAAGTCAAGAACAGATTGGCTGAAAAAATTAGAGACATTTTCTTGGATTTTGGGAATCTGATCTTCCTTACACCGGATGCGGAGTTAGATTGTTGGGCTGATGGAGGGGTGCATCCAATGACCTGTGAGGCCACTGGTTACATCGTTATGGCTTTCTGGTCGAGACAAAGCCTCGAGAAAGTTTTAAGAGAATACCCCTTGGTTTTTGATGGAGTAAAAACGTATTCTTTATTTTATTCGCAAGTGGAGCGCATAATGGAGCAGTTTGAGAAAAAATTGGAAGCTAAGTCACAAATTTACGAGGAACCTGCTTTACGTTACTTTTTCATCATGAATAATCTAAGTCATATTGAGTACAGATTGGAAAGCTTTTGGGATCGTAACTTACAGAAAAACACAGGGCAATACTTTGAACTCTATTGCAGATACTCATGGAATAGAGTGATAGATTTTTTGAAGATGGATATCAATGAGTCAGTTACGTCTAATATTGTAGCAAATTCAATGAAAGACAATCTAAGTTTGTTCAATCAGAAGTTTAAGGAGACGTGTGGAATTCAGTGTACATGGCGTGTTTTTGATGAGAAGCTAAGGAAACAAATAATAACTTTCCTCGAAATCAAGTTGTTGCCATCATATGAAAACTTCATTGCTATTTTTCAGAATGTTGTTGGTAAGAATGCAGATGAGTATATCGTGTATAGAATGTCTGACATTCAAGATCAACTAAATCTTATGTTTCTGTTAGAGGAAGTTGATTGTGTTAGAGAGGATTTGATGAAAACCAATAAGCTAGCTAGCTAG 1209 0.3706 MNELKKNNLNIGKMLLQKVKEDLLINKLLALRKMGFQDYVIERWIKTSKVALKILFPSERQLYDRVFSESNSSNLYFSRTCSGAMIQLLNFSVAFANRSPSAWRLFKILNLFETLCDLIHDFESLFLDRLVSEAIQVKNRLAEKIRDIFLDFGNLIFLTPDAELDCWADGGVHPMTCEATGYIVMAFWSRQSLEKVLREYPLVFDGVKTYSLFYSQVERIMEQFEKKLEAKSQIYEEPALRYFFIMNNLSHIEYRLESFWDRNLQKNTGQYFELYCRYSWNRVIDFLKMDINESVTSNIVANSMKDNLSLFNQKFKETCGIQCTWRVFDEKLRKQIITFLEIKLLPSYENFIAIFQNVVGKNADEYIVYRMSDIQDQLNLMFLLEEVDCVREDLMKTNKLAS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03858 402 SUPERFAMILY Cullin repeat-like 40 382 IPR016159 -
Trre9g03858 402 PANTHER EXOCYST COMPLEX PROTEIN EXO70 38 382 IPR004140 GO:0000145|GO:0006887
Trre9g03858 402 Pfam Exo70 exocyst complex subunit 42 379 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03858 402 Gene3D Exocyst complex component Exo70 15 387 - -
Trre9g03858 402 Coils Coil 214 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03858 Trre-Chr9 46842903 46844215 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03858 31 382 EXO70 exocyst subunit family AT5G58430 41.398 2.03e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03858 - K07195 psat:127118474 478.404