Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03848 ATGGAACTACATTTTGAAGAAAATCTCAGTTGTTTTAACATGCACTTTGCAGAGACACTCAGAATTCAGTGCACATGGTCTGTTCATGATGAGAAGCTAAGGGGAGAAATAATTTCATCTCTCAAAAACATCTTGCTGCCAGTGTATGGATCTTTCATTGCCAAGTTTCAAGATTTTCTTAAAAACGATGCTTACGAGTATATTGAGTATGGAATTTTTGACATCGAAGATGTACTAGATAGTTTGTTTCTTGGAAACAAGACAGATGAATGA 273 0.3516 MELHFEENLSCFNMHFAETLRIQCTWSVHDEKLRGEIISSLKNILLPVYGSFIAKFQDFLKNDAYEYIEYGIFDIEDVLDSLFLGNKTDE 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03848 90 PANTHER EXOCYST COMPLEX PROTEIN EXO70 6 84 IPR004140 GO:0000145|GO:0006887
Trre9g03848 90 Pfam Exo70 exocyst complex subunit 6 80 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03848 90 Gene3D Exocyst complex component Exo70 4 86 - -
Trre9g03848 90 SUPERFAMILY Cullin repeat-like 7 83 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03848 Trre-Chr9 46768066 46768338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03848 6 88 EXO70 exocyst subunit family AT5G58430 42.353 1.64e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03848 - - psat:127118477 134.42