Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03846 ATGGATTCTCTGCAATTGACTAATACTGATATTGCTAGTGTTAGTAGTAGCAATAGCATCGATTCACCACAATTGGTGATCACTACTGATATTAGTAGAGTGATGGAAAAACTCGGGACTTTTGTGAAGGAGCTTCGAGAAGAAAATTTAAATTTCATTAAAATGCTTTTGGATCATGTTCTTGACTCTCAATTTGTTGCGACCGACCCTAACTTCGTGATGGATGCGCTGAAGCAAGAAACTATCAAAGGCCTAGAGGAAACAGCAAAGGTTATGGTGAGCGCTGGGTTTGAGAAGGAATTTTCTGACATATACAACAATTGTCGTATGGAGTGCTTACAAGAGTGCCTAATGCATAGATTATTCAGGTTAAAGAAGCTCACCAGTGAGGACGTTCACATTATGCCATGGAAGGGTCTCGAAGACGAGATTAAAAGATGGATTAGAGCTTTCAATGTCACCCTCAAGATACTTTTCCCTGGCGAGCGACAACTATGTGATCGTGTCTTCTCCGGGTTCTCATCTGCCGCTGATTTCTCCTTCATTGAGATTTGCAGATCATCCACCACTCAACTTCTAAATTTTGCAGACTCTATTGCCACCGGAAGTCGTTCTCCAGAGTGTTTGTTTAAAATCATCGAGGTGTTTGAAACATTACGTGACCTAATTCCTGAACTTGAGTCCTTATTTTGTGATAAGGACAGTGTGTCTCTAAAGAATGAAGCAATTACCTTATGGAAAAAATTTGGGAAAGCAATTAGAGATATTTTCATGAAGTTGGAGTATTTGATTGAGCAAGACTTGACGACAGGGAGATATCTCAGCAGCAGTCTTCACCCGATTACCCAACATGTGGTGAACTACCTCCGTGTAGTTTCCCAATCACGGCAAACACTAGAGCAGGTGTTTGCCGAATCCTCACTTTCTGGGAAAATTCTTAATATTATGGACATATTGGAGAGTAATTTAGAAGCGAAGGCCAAATGCTACGAGGATCCTTCTTTAGGCTATATTTTCTTGATGAATAACAACACTTATATACTTGAGATGACCAAAGATAATGAACTAGGAACCCTTTTAGGGGATGAATGGTACGGAAAACACACACTGAAAATTTCGCACTACCAAAAAACCTTGAGCACTATGACCCCCACTTTAGTGCAAGATTTTCTCCAGTTATTGTACAACAAACAACTGATTAATAAAATAGATGAGTGGAATGTGGAAGGTTCCGAAGGAGCAAAGGCGTACAACGGATTAATTTTGCACGAAATAAAAGCTTCACTCTCTCAACCACCAGAAAGCAGGAAAATGGAACCAGAGACGGAGATAAGAACAATAGTACTGATCTCTCCACCAGAAATAGGACACATAGATACTATGCCACCGGAAGACGGGTTTACATGGAGAAAATACGGCAAGAAAGAAATACCTGGCGTCAAATACTCCAGGAGTTACTATAGGTGCAGCCACATGAAATTAGATGCATGTCTAGCCAAGAAGAAAGTACAACAACTTGGTGATAATCCAAACGTGTTTGAAGTAAAATACTATGGTGCACATTCCTGCCGTACGTCCTTAAAAATACCATCACTATTTTTACCAGCACTAAGGATCTCAAAGGATATGACTCAAACTACCATGCCGGCATCAACTTCATATTCTGAGTGGCTTTCATCGGGCATGCCAGCCAAATACATAGACTCTATCCCTACGGCCAAGCTAGCTGCTCCAGATGACGGTGGGCATCATCCTATGATGGACAGTGTCGTAGGGTTTCTTGTTTCTGCTATCGAATCACAAGCCTCGATTTGCCGTACATCACAGAAGATCAAGGCTGTTATTGGAGACAAAGCATTTTCACCACAAACGGAGGGGACAATGGAACTGTTAGAGAGCATATTAGCATCAAAGTCCGGAAAATATGTGGACGAGTCGTTGCGTCATTTCTTCATGATGAATAATCTTAATAGTATACAAATGCAAGCACATGTTAGGGAAAGTTTGCTTAGTTGTCCACCTCTAACCACCCTCTTGCCACATCATCAATTAAAAATATTATTTTCATACCATTTTTAG 2079 0.4064 MDSLQLTNTDIASVSSSNSIDSPQLVITTDISRVMEKLGTFVKELREENLNFIKMLLDHVLDSQFVATDPNFVMDALKQETIKGLEETAKVMVSAGFEKEFSDIYNNCRMECLQECLMHRLFRLKKLTSEDVHIMPWKGLEDEIKRWIRAFNVTLKILFPGERQLCDRVFSGFSSAADFSFIEICRSSTTQLLNFADSIATGSRSPECLFKIIEVFETLRDLIPELESLFCDKDSVSLKNEAITLWKKFGKAIRDIFMKLEYLIEQDLTTGRYLSSSLHPITQHVVNYLRVVSQSRQTLEQVFAESSLSGKILNIMDILESNLEAKAKCYEDPSLGYIFLMNNNTYILEMTKDNELGTLLGDEWYGKHTLKISHYQKTLSTMTPTLVQDFLQLLYNKQLINKIDEWNVEGSEGAKAYNGLILHEIKASLSQPPESRKMEPETEIRTIVLISPPEIGHIDTMPPEDGFTWRKYGKKEIPGVKYSRSYYRCSHMKLDACLAKKKVQQLGDNPNVFEVKYYGAHSCRTSLKIPSLFLPALRISKDMTQTTMPASTSYSEWLSSGMPAKYIDSIPTAKLAAPDDGGHHPMMDSVVGFLVSAIESQASICRTSQKIKAVIGDKAFSPQTEGTMELLESILASKSGKYVDESLRHFFMMNNLNSIQMQAHVRESLLSCPPLTTLLPHHQLKILFSYHF 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03846 692 PANTHER EXOCYST COMPLEX PROTEIN EXO70 574 663 IPR004140 GO:0000145|GO:0006887
Trre9g03846 692 Gene3D Exocyst complex component Exo70 564 673 - -
Trre9g03846 692 Gene3D Exocyst complex component Exo70 21 413 - -
Trre9g03846 692 SMART WRKY_cls 463 525 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03846 692 Pfam Exo70 exocyst complex subunit 145 379 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03846 692 Pfam Exo70 exocyst complex subunit 572 667 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03846 692 SUPERFAMILY Cullin repeat-like 34 379 IPR016159 -
Trre9g03846 692 Pfam WRKY DNA -binding domain 464 524 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03846 692 SUPERFAMILY Cullin repeat-like 576 662 IPR016159 -
Trre9g03846 692 Gene3D WRKY domain 456 526 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03846 692 SUPERFAMILY WRKY DNA-binding domain 458 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03846 692 ProSiteProfiles WRKY domain profile. 464 526 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03846 Trre-Chr9 46753142 46757645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03846 68 431 EXO70 exocyst subunit family AT5G58430 49.871 2.71e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03846 Exo70 7.3e-60 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03846 K07195 - mtr:11409580 676.781