Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03843 ATGACCGCAAATGATATTAGTAGTGTGATGGAACAACTAGGTACTTTTGTACAGGCGCTTCAACACGAAAACTTAAATATCATTCAAATGGTTTTGGATCATAAAAAAGGACTTTCTGCTAAAGAAAACTCTCAATTGGTGGTGACTGACCCTAACTTCATGATGGATGTGCTGAAGCCAGAAACAATCAAAGGCGTTGAGGAAACAGCAAAGGTTATGGTGAGTGCTGGGTTTGAGAAGGATTTTTCGGATGTGTACAACAGTTGTCGAAGGGAATGCTTGGATAAGTGCCTAATGGATAGATTATTCAGGTTACAGAAGCTAAGCATTGTGGAGCATTTGTTTAAAATTCTGAAGTTGTTTGAAACATTGCGTGACCTAATTCCCGAATTTGAGTCATTATTTTATGATCAATACAGTGTATCTCTAAGAAGTGAAGCAATGACCATATGGAAGAGACTCGGGGAATCAATCAAAGGCATTTTCATGGAGTTGGTGTCTTCCTTTAATGGTTTCGACAATTTTTTTTTTCCTTTTTTCTATGGATTAAAAATCATTTTGTTGTGA 567 0.3686 MTANDISSVMEQLGTFVQALQHENLNIIQMVLDHKKGLSAKENSQLVVTDPNFMMDVLKPETIKGVEETAKVMVSAGFEKDFSDVYNSCRRECLDKCLMDRLFRLQKLSIVEHLFKILKLFETLRDLIPEFESLFYDQYSVSLRSEAMTIWKRLGESIKGIFMELVSSFNGFDNFFFPFFYGLKIILL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03843 188 PANTHER EXOCYST COMPLEX PROTEIN EXO70 111 166 IPR004140 GO:0000145|GO:0006887
Trre9g03843 188 Pfam Exo70 exocyst complex subunit 85 169 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03843 188 SUPERFAMILY Cullin repeat-like 12 168 IPR016159 -
Trre9g03843 188 Gene3D Exocyst complex component Exo70 3 109 - -
Trre9g03843 188 Gene3D Exocyst complex component Exo70 110 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03843 Trre-Chr9 46696129 46696695 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03843 112 165 EXO70 exocyst subunit family AT5G58430 70.370 2.30e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03843 K07195 - mtr:11409580 149.058