Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03841 ATGAATGGGAAACCAGATGCATATAGCTTGATTTCATGTGCTGCTTTTGCTATCATGTCATTGAGTTCGTCGAGGCAAACTCAATGCGGATTTGAAATCGATCTTCTCTATTTCTTCCTTGGATGTCTAATTGTGCAACTCATGAAGATCAAATTGCAGTTGTTCATTCTTGGAGCAGGTTTCAGCTACTCTCTTATTATTCTCCGTTCTTTTTTATCTTCTATTGATGCTAGAGTAGACGATCAATACTCTCAACTCCAAGATGGAAACTCGGTAGTTCTTTGTATGGATTCTCTACAATTGACTAATACTGATATTGCTAGTGTTAGTAGTAGCAATAGCATCGATTCACCACAATTGGTGATCACTACTGATATTAGTAGTGTGATGGAAAAACTCGGGACTTTTGTGAAGGAGCTTCGAGAAGAAAATTTAAATTTTATTGAAATGCTTTTGAATCATGTTCTTCACTCTCAATTTGTTGCGACTGACCCTAACTTCATGATGGATGCGCTGAAGCAAGAAACTATCAAAGGCCTAGAGGAAACAGCAAAGGTTATGGTGAGCGCTGGGTTTGAGAAGGAATTTTCTGACGTGTACAACAATTGTCGTATGGAGTGCTTACAAGAGTGCCTATTGCATATATTAAATACGGTAAAGAAGCTCAGCAGTGAGGATGTTCACATTATGCCAAGGAAAAGGAAGGATCTCAAAGACGAGATTAAAATATGGATTAGAGCTTTCAATGTCACCCTCAAGATAGTTTTCCCTGGTGAGCGACAACTATGTGATCGTGTCTTGTCCGGGTTCTCATCTGCCGCTGATTTCTCCTTCATTGAGATTTGCAGGGGATCCACCATTCTTCTTCTAACTTTTGCAGACTCTATTGCAACCAGAAGTTGTTCTCCAGAGGGTTTGTTTAATATCATCGAGGTGTTTGAAACATTCCGTGACCTAATTCCAGAATTTGAGTCCTTATTTTGTAGTCAGAATAGTGTGTCTCTAAAGAATGAAGCAATTACCACATGGAAGATATTTCGGAAAGTAATTAAAGATATTTTCATGGGGTTGGAGAATTTTATTGACAAAGGCTTGATGATGGAGACATATCTCAGCAGCGGTCTTCACCCGATTACTCAACAGGTTATGAACTACCTCCGTGTAGTTTCCAAATCTAAGAAAACACTAGAGCAAGTGTTTGAAGATTCCTCATTTTCTGGGATGATTCATAGGATTATGGACATATTGGAGAGTAATTTGGAAATAAAGGCCAAATGCTACGAGGATCCTTCTTTAGGCTATATTTTCTTGATGAATAACAACACGGATATAGTTCAGATGACCAAAGATAATGAACTAGGAATCCTTTTAGGGGATGAATGGTACCGAAAATACACGCTGAAAATTTCACAATACCAGAAATTCTTGGGCACTATGTCCCCCACTTTAGTGCAAGATTTTCTCCAGTTATTGTACAACAAACAACAGATTAATAAAATAGATGAGTGGAATGTAAAAGGTTCCAAAGGAGCAAAGGCGTACAAAGGAGATGTGCACGAAATAAAAGCATCACTCTCTCAACCACCAGAAAGGAAAATGAAACCAGAGGCGGAGATAAAAACAATAGTACTGATCTCTCCTCCACCAGTAACAGGAAACCTAGATAAAATGCCACCGAAAGACGGGTTTACATGGAGAAAATACGGGGAGAAAGAGATACTTGGTTTCAAATACTCCAGGAGTTACTATAGGTGCAGCCACATGAAATTAGACGCCTGTCGAGCCAAGAAGAAAGTACAACAACTTGGTGACAATCCAAACGTGTTTGAAGTAACATACAATGGTGCACATTCCTGCCGTATATCCTTGACAATGGTGCACATAGCTGCTCCGGAAGACGGTGGGTATCATCCAATGATGGACAACATCGGGGACTATCTTACCGGTTCACTGCAGATTGTTTCTCCTATCAGATCACAGGATGTGTCTCAAACCACCATGCCGGCGTCAACTTCATATTCTGAGTGGCTTTCATCGCGCATGCCAGCCAAATACATAGACTCTATCCCAACGGCCAAGCTAGCTGCTCCGGATGACGGTGGGCATCATCCTATGATGGAGAATGTCATAGGTTTTCTTCTTTCTGCTATCAGATCACAGGTCTCGATCAGCTGTGAATCACAGCAGACCGAGGCTGTTATTGGAGAAAAAGCATTTTCACCACAAATGGAGGGGACAATGGAACTGTTAGAGAGCATATTAGCATCGAAGTCCGGAAAATATGTGGACGAGTCGTTGCGTCATTTTTTCATGATGAATAATTGGAGAATAAAAGTCCAACAAAAACTTGAACTCTATCAAAGAGAGTCATGGGATAAGGTGTTGGAATTTTTAAAGTTGGATATTATCAATGACTCCAAGGAAATTAATTTTTCAATAGATTTGATGAAAGAAAAGCTCAGATTGTTTAACATGCACTTTACTGAGACATGTAGAATTCAGTGCACATGGTCTGTTCATGATGAGATGCTAAGGGGAGAAATAATTTCATCTCTCAAAAACATCTTGCTGCCAGCATATGGAATCTTCATTGGGAAGTTTCAGGATTCTCTTAAAGACAAGGCTTACAAGTATATTGAGTATGGAATGTTTGACATTCATGATGTACTTGATAATTTGTTTCTCGGAACCAAGAAATACAAATACAGATACAGTGGAATTGATGATCTTTTAACAATACCTTCGAAAGGATGGTTAGCTCACGATGCTGAACAACAAAGTTCTATTTTGGAAAAACTAAACTCAAACTCTGGAATTAGGTCACACATTGTTTCAAACACATCGAGGACTCTAAACAACCTCTCCGGTGATTTGCTTCCTAAGGCTATAGCATCGGCGAAATTTAGCAGCCGAAGTGTAGACTCCCTGCAAACACCTGTGAACGATATATCAGCGGCAGAGGAGAATCCAAAGAAACCCGATCGCATAATTGCCGCTCAGTGGGGAACAATATCTTGA 3018 0.3983 MNGKPDAYSLISCAAFAIMSLSSSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFILGAGFSYSLIILRSFLSSIDARVDDQYSQLQDGNSVVLCMDSLQLTNTDIASVSSSNSIDSPQLVITTDISSVMEKLGTFVKELREENLNFIEMLLNHVLHSQFVATDPNFMMDALKQETIKGLEETAKVMVSAGFEKEFSDVYNNCRMECLQECLLHILNTVKKLSSEDVHIMPRKRKDLKDEIKIWIRAFNVTLKIVFPGERQLCDRVLSGFSSAADFSFIEICRGSTILLLTFADSIATRSCSPEGLFNIIEVFETFRDLIPEFESLFCSQNSVSLKNEAITTWKIFRKVIKDIFMGLENFIDKGLMMETYLSSGLHPITQQVMNYLRVVSKSKKTLEQVFEDSSFSGMIHRIMDILESNLEIKAKCYEDPSLGYIFLMNNNTDIVQMTKDNELGILLGDEWYRKYTLKISQYQKFLGTMSPTLVQDFLQLLYNKQQINKIDEWNVKGSKGAKAYKGDVHEIKASLSQPPERKMKPEAEIKTIVLISPPPVTGNLDKMPPKDGFTWRKYGEKEILGFKYSRSYYRCSHMKLDACRAKKKVQQLGDNPNVFEVTYNGAHSCRISLTMVHIAAPEDGGYHPMMDNIGDYLTGSLQIVSPIRSQDVSQTTMPASTSYSEWLSSRMPAKYIDSIPTAKLAAPDDGGHHPMMENVIGFLLSAIRSQVSISCESQQTEAVIGEKAFSPQMEGTMELLESILASKSGKYVDESLRHFFMMNNWRIKVQQKLELYQRESWDKVLEFLKLDIINDSKEINFSIDLMKEKLRLFNMHFTETCRIQCTWSVHDEMLRGEIISSLKNILLPAYGIFIGKFQDSLKDKAYKYIEYGMFDIHDVLDNLFLGTKKYKYRYSGIDDLLTIPSKGWLAHDAEQQSSILEKLNSNSGIRSHIVSNTSRTLNNLSGDLLPKAIASAKFSSRSVDSLQTPVNDISAAEENPKKPDRIIAAQWGTIS 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03841 1005 PANTHER EXOCYST COMPLEX PROTEIN EXO70 119 474 IPR004140 GO:0000145|GO:0006887
Trre9g03841 1005 SUPERFAMILY Cullin repeat-like 126 474 IPR016159 -
Trre9g03841 1005 SUPERFAMILY WRKY DNA-binding domain 555 620 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03841 1005 ProSiteProfiles WRKY domain profile. 561 622 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03841 1005 SUPERFAMILY Cullin repeat-like 695 894 IPR016159 -
Trre9g03841 1005 SMART WRKY_cls 559 621 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03841 1005 Pfam WRKY DNA -binding domain 560 620 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03841 1005 Gene3D Exocyst complex component Exo70 686 776 - -
Trre9g03841 1005 Gene3D Exocyst complex component Exo70 777 897 - -
Trre9g03841 1005 Gene3D Exocyst complex component Exo70 117 514 - -
Trre9g03841 1005 Gene3D WRKY domain 549 621 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03841 1005 Pfam Exo70 exocyst complex subunit 691 776 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03841 1005 Pfam Exo70 exocyst complex subunit 244 475 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03841 1005 Pfam Exo70 exocyst complex subunit 778 891 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03841 Trre-Chr9 46675724 46681886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03841 692 897 EXO70 exocyst subunit family AT5G58430 38.034 8.00e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03841 Exo70 4.4e-52 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03841 K07195 - cam:101500706 927.161