LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03841	ATGAATGGGAAACCAGATGCATATAGCTTGATTTCATGTGCTGCTTTTGCTATCATGTCATTGAGTTCGTCGAGGCAAACTCAATGCGGATTTGAAATCGATCTTCTCTATTTCTTCCTTGGATGTCTAATTGTGCAACTCATGAAGATCAAATTGCAGTTGTTCATTCTTGGAGCAGGTTTCAGCTACTCTCTTATTATTCTCCGTTCTTTTTTATCTTCTATTGATGCTAGAGTAGACGATCAATACTCTCAACTCCAAGATGGAAACTCGGTAGTTCTTTGTATGGATTCTCTACAATTGACTAATACTGATATTGCTAGTGTTAGTAGTAGCAATAGCATCGATTCACCACAATTGGTGATCACTACTGATATTAGTAGTGTGATGGAAAAACTCGGGACTTTTGTGAAGGAGCTTCGAGAAGAAAATTTAAATTTTATTGAAATGCTTTTGAATCATGTTCTTCACTCTCAATTTGTTGCGACTGACCCTAACTTCATGATGGATGCGCTGAAGCAAGAAACTATCAAAGGCCTAGAGGAAACAGCAAAGGTTATGGTGAGCGCTGGGTTTGAGAAGGAATTTTCTGACGTGTACAACAATTGTCGTATGGAGTGCTTACAAGAGTGCCTATTGCATATATTAAATACGGTAAAGAAGCTCAGCAGTGAGGATGTTCACATTATGCCAAGGAAAAGGAAGGATCTCAAAGACGAGATTAAAATATGGATTAGAGCTTTCAATGTCACCCTCAAGATAGTTTTCCCTGGTGAGCGACAACTATGTGATCGTGTCTTGTCCGGGTTCTCATCTGCCGCTGATTTCTCCTTCATTGAGATTTGCAGGGGATCCACCATTCTTCTTCTAACTTTTGCAGACTCTATTGCAACCAGAAGTTGTTCTCCAGAGGGTTTGTTTAATATCATCGAGGTGTTTGAAACATTCCGTGACCTAATTCCAGAATTTGAGTCCTTATTTTGTAGTCAGAATAGTGTGTCTCTAAAGAATGAAGCAATTACCACATGGAAGATATTTCGGAAAGTAATTAAAGATATTTTCATGGGGTTGGAGAATTTTATTGACAAAGGCTTGATGATGGAGACATATCTCAGCAGCGGTCTTCACCCGATTACTCAACAGGTTATGAACTACCTCCGTGTAGTTTCCAAATCTAAGAAAACACTAGAGCAAGTGTTTGAAGATTCCTCATTTTCTGGGATGATTCATAGGATTATGGACATATTGGAGAGTAATTTGGAAATAAAGGCCAAATGCTACGAGGATCCTTCTTTAGGCTATATTTTCTTGATGAATAACAACACGGATATAGTTCAGATGACCAAAGATAATGAACTAGGAATCCTTTTAGGGGATGAATGGTACCGAAAATACACGCTGAAAATTTCACAATACCAGAAATTCTTGGGCACTATGTCCCCCACTTTAGTGCAAGATTTTCTCCAGTTATTGTACAACAAACAACAGATTAATAAAATAGATGAGTGGAATGTAAAAGGTTCCAAAGGAGCAAAGGCGTACAAAGGAGATGTGCACGAAATAAAAGCATCACTCTCTCAACCACCAGAAAGGAAAATGAAACCAGAGGCGGAGATAAAAACAATAGTACTGATCTCTCCTCCACCAGTAACAGGAAACCTAGATAAAATGCCACCGAAAGACGGGTTTACATGGAGAAAATACGGGGAGAAAGAGATACTTGGTTTCAAATACTCCAGGAGTTACTATAGGTGCAGCCACATGAAATTAGACGCCTGTCGAGCCAAGAAGAAAGTACAACAACTTGGTGACAATCCAAACGTGTTTGAAGTAACATACAATGGTGCACATTCCTGCCGTATATCCTTGACAATGGTGCACATAGCTGCTCCGGAAGACGGTGGGTATCATCCAATGATGGACAACATCGGGGACTATCTTACCGGTTCACTGCAGATTGTTTCTCCTATCAGATCACAGGATGTGTCTCAAACCACCATGCCGGCGTCAACTTCATATTCTGAGTGGCTTTCATCGCGCATGCCAGCCAAATACATAGACTCTATCCCAACGGCCAAGCTAGCTGCTCCGGATGACGGTGGGCATCATCCTATGATGGAGAATGTCATAGGTTTTCTTCTTTCTGCTATCAGATCACAGGTCTCGATCAGCTGTGAATCACAGCAGACCGAGGCTGTTATTGGAGAAAAAGCATTTTCACCACAAATGGAGGGGACAATGGAACTGTTAGAGAGCATATTAGCATCGAAGTCCGGAAAATATGTGGACGAGTCGTTGCGTCATTTTTTCATGATGAATAATTGGAGAATAAAAGTCCAACAAAAACTTGAACTCTATCAAAGAGAGTCATGGGATAAGGTGTTGGAATTTTTAAAGTTGGATATTATCAATGACTCCAAGGAAATTAATTTTTCAATAGATTTGATGAAAGAAAAGCTCAGATTGTTTAACATGCACTTTACTGAGACATGTAGAATTCAGTGCACATGGTCTGTTCATGATGAGATGCTAAGGGGAGAAATAATTTCATCTCTCAAAAACATCTTGCTGCCAGCATATGGAATCTTCATTGGGAAGTTTCAGGATTCTCTTAAAGACAAGGCTTACAAGTATATTGAGTATGGAATGTTTGACATTCATGATGTACTTGATAATTTGTTTCTCGGAACCAAGAAATACAAATACAGATACAGTGGAATTGATGATCTTTTAACAATACCTTCGAAAGGATGGTTAGCTCACGATGCTGAACAACAAAGTTCTATTTTGGAAAAACTAAACTCAAACTCTGGAATTAGGTCACACATTGTTTCAAACACATCGAGGACTCTAAACAACCTCTCCGGTGATTTGCTTCCTAAGGCTATAGCATCGGCGAAATTTAGCAGCCGAAGTGTAGACTCCCTGCAAACACCTGTGAACGATATATCAGCGGCAGAGGAGAATCCAAAGAAACCCGATCGCATAATTGCCGCTCAGTGGGGAACAATATCTTGA	3018	0.3983	MNGKPDAYSLISCAAFAIMSLSSSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFILGAGFSYSLIILRSFLSSIDARVDDQYSQLQDGNSVVLCMDSLQLTNTDIASVSSSNSIDSPQLVITTDISSVMEKLGTFVKELREENLNFIEMLLNHVLHSQFVATDPNFMMDALKQETIKGLEETAKVMVSAGFEKEFSDVYNNCRMECLQECLLHILNTVKKLSSEDVHIMPRKRKDLKDEIKIWIRAFNVTLKIVFPGERQLCDRVLSGFSSAADFSFIEICRGSTILLLTFADSIATRSCSPEGLFNIIEVFETFRDLIPEFESLFCSQNSVSLKNEAITTWKIFRKVIKDIFMGLENFIDKGLMMETYLSSGLHPITQQVMNYLRVVSKSKKTLEQVFEDSSFSGMIHRIMDILESNLEIKAKCYEDPSLGYIFLMNNNTDIVQMTKDNELGILLGDEWYRKYTLKISQYQKFLGTMSPTLVQDFLQLLYNKQQINKIDEWNVKGSKGAKAYKGDVHEIKASLSQPPERKMKPEAEIKTIVLISPPPVTGNLDKMPPKDGFTWRKYGEKEILGFKYSRSYYRCSHMKLDACRAKKKVQQLGDNPNVFEVTYNGAHSCRISLTMVHIAAPEDGGYHPMMDNIGDYLTGSLQIVSPIRSQDVSQTTMPASTSYSEWLSSRMPAKYIDSIPTAKLAAPDDGGHHPMMENVIGFLLSAIRSQVSISCESQQTEAVIGEKAFSPQMEGTMELLESILASKSGKYVDESLRHFFMMNNWRIKVQQKLELYQRESWDKVLEFLKLDIINDSKEINFSIDLMKEKLRLFNMHFTETCRIQCTWSVHDEMLRGEIISSLKNILLPAYGIFIGKFQDSLKDKAYKYIEYGMFDIHDVLDNLFLGTKKYKYRYSGIDDLLTIPSKGWLAHDAEQQSSILEKLNSNSGIRSHIVSNTSRTLNNLSGDLLPKAIASAKFSSRSVDSLQTPVNDISAAEENPKKPDRIIAAQWGTIS	1005

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g03841	1005	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	119	474	IPR004140	GO:0000145\|GO:0006887
	Trre9g03841	1005	SUPERFAMILY	Cullin repeat-like	126	474	IPR016159	-
	Trre9g03841	1005	SUPERFAMILY	WRKY DNA-binding domain	555	620	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g03841	1005	ProSiteProfiles	WRKY domain profile.	561	622	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g03841	1005	SUPERFAMILY	Cullin repeat-like	695	894	IPR016159	-
	Trre9g03841	1005	SMART	WRKY_cls	559	621	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g03841	1005	Pfam	WRKY DNA -binding domain	560	620	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre9g03841	1005	Gene3D	Exocyst complex component Exo70	686	776	-	-
	Trre9g03841	1005	Gene3D	Exocyst complex component Exo70	777	897	-	-
	Trre9g03841	1005	Gene3D	Exocyst complex component Exo70	117	514	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03841	Trre-Chr9	46675724	46681886	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03841	692	897	EXO70 exocyst subunit family	AT5G58430	38.034	8.00e-34	137

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trre9g03841		Exo70	4.4e-52	CL0295

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03841	K07195		-	cam:101500706	927.161

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