Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03840 ATGAATGGGAAACCAGATGCATATAGCTTGATTTCATGTGCTGCTTTTGCTATCATGTCATTGAGTTCGTCGAGGCAAACTCAATGCGGATTTGAAATCGATCTTCTCTATTTCTTCCTTGGATGTCTAATTGTGCAACTCATGAAGATCAAATTGCAGTTGTTCATTCTTGGAGCAGGTTTCAGCTACTCTCTTATTATTCTCCGTTCTTTTTTATCTTCTATTGATGCTAGAGTAGACGATCAATACTCTCAACTCCAAGATGGAAACTCGGTAGTTCTTTGTATGGATTCTCTACAATTGACTAATACTGATATTGCTAGTGTTAGTAGTAGCAATAGCATCGATTCACCACAATTGGTGATCACTACTGATATTAGTAGTGTGATGGAAAAACTCGGGACTTTTGTGAAGGAGCTTCGAGAAGAAAATTTAAATTTTATTGAAATGCTTTTGAATCATGTTCTTCACTCTCAATTTGTTGCGACTGACCCTAACTTCATGATGGATGCGCTGAAGCAAGAAACTATCAAAGGCCTAGAGGAAACAGCAAAGGTTATGGTGAGCGCTGGGTTTGAGAAGGAATTTTCTGACGTGTACAACAATTGTCGTATGGAGTGCTTACAAGAGTGCCTATTGCATATATTAAATACGGTAAAGAAGCTCAGCAGTGAGGATGTTCACATTATGCCAAGGAAAAGGAAGGATCTCAAAGACGAGATTAAAATATGGATTAGAGCTTTCAATGTCACCCTCAAGATAGTTTTCCCTGGTGAGCGACAACTATGTGATCGTGTCTTGTCCGGGTTCTCATCTGCCGCTGATTTCTCCTTCATTGAGATTTGCAGGGGATCCACCATTCTTCTTCTAACTTTTGCAGACTCTATTGCAACCAGAAGTTGTTCTCCAGAGGGTTTGTTTAATATCATCGAGGTGTTTGAAACATTCCGTGACCTAATTCCAGAATTTGAGTCCTTATTTTGTAGTCAGAATAGTGTGTCTCTAAAGAATGAAGCAATTACCACATGGAAGATATTTCGGAAAGTAATTAAAGATATTTTCATGGGGTTGGAGAATTTTATTGACAAAGGCTTGATGATGGAGACATATCTCAGCAGCGGTCTTCACCCGATTACTCAACAGGTTATGAACTACCTCCGTGTAGTTTCCAAATCTAAGAAAACACTAGAGCAAGTGTTTGAAGATTCCTCATTTTCTGGGATGATTCATAGGATTATGGACATATTGGAGAGTAATTTGGAAATAAAGGCCAAATGCTACGAGGATCCTTCTTTAGGCTATATTTTCTTGATGAATAACAACACGGATATAGTTCAGATGACCAAAGATAATGAACTAGGAATCCTTTTAGGGGATGAATGGTACCGAAAATACACGCTGAAAATTTCACAATACCAGAAATTCTTGGGCACTATGTCCCCCACTTTAGTGCAAGATTTTCTCCAGTTATTGTACAACAAACAACAGATTAATAAAATAGATGAGTGGAATGTAAAAGGTTCCAAAGGAGCAAAGGCGTACAAAGGAGATGTGCACGAAATAAAAGCATCACTCTCTCAACCACCAGAAAGCAGGAAAATGAAACCAGAGGCGGAGATAAAAACAATAGTACTGATCTCTCCTCCACCAGTAACAGGAAACCTAGATAAAATGCCACCGAAAGACGGGTTTACATGGAGAAAATACGGGGAGAAAGAGATACTTGGTTTCAAATACTCCAGGAGTTACTATAGGTGCAGCCACATGAAATTAGACGCCTGTCGAGCCAAGAAGAAAGTACAACAACTTGGTGACAATCCAAACGTGTTTGAAGTAACATACAATGGTGCACATTCCTGCCGTATATCCTTGACAATGGTGCACATAGCTGCTCCGGAAGACGGTGGGTATCATCCAATGATGGACAACATCGGGGACTATCTTACCGGTTCACTGCAGATTGTTTCTCCTATCAGATCACAGGATGTGTCTCAAACCACCATGCCGGCGTCAACTTCATATTCTGAGTGGCTTTCATCGCGCATGCCAGCCAAATACATAGACTCTATCCCAACGGCCAAGCTAGCTGCTCCGGATGACGGTGGGCATCATCCTATGATGGAGAATGTCATAGGTTTTCTTCTTTCTGCTATCAGATCACAGGTCTCGATCAGCTGTGAATCACAGCAGACCGAGGCTGTTATTGGAGAAAAAGCATTTTCACCACAAATGGAGGGGACAATGGAACTGTTAGAGAGCATATTAGCATCGAAGTCCGGAAAATATGTGGACGAGTCGTTGCGTCATTTTTTCATGATGAATAATTGGAGAATAAAAGTCCAACAAAAACTTGAACTCTATCAAAGAGAGTCATGGGATAAGGTGTTGGAATTTTTAAAGTTGGATATTATCAATGACTCCAAGGAAATTAATTTTTCAATAGATTTGATGAAAGAAAAGCTCAGATTGTTTAACATGCACTTTACTGAGACATGTAGAATTCAGTGCACATGGTCTGTTCATGATGAGATGCTAAGGGGAGAAATAATTTCATCTCTCAAAAACATCTTGCTGCCAGCATATGGAATCTTCATTGGGAAGTTTCAGGATTCTCTTAAAGACAAGGCTTACAAGTATATTGAGTATGGAATGTTTGACATTCATGATGTACTTGATAATTTGTTTCTCGGAACCAAGAAATACAAATACAGATACAGTGGAATTGATGATCTTTTAACAATACCTTCGAAAGGATGGTTAGCTCACGATGCTGAACAACAAAGTTCTATTTTGGAAAAACTAAACTCAAACTCTGGAATTAGGTCACACATTGTTTCAAACACATCGAGGACTCTAAACAACCTCTCCGGTGATTTGCTTCCTAAGGCTATAGCATCGGCGAAATTTAGCAGCCGAAGTGTAGACTCCCTGCAAACACCTGTGAACGATATATCAGCGGCAGAGGAGAATCCAAAGAAACCCGATCGCATAATTGCCGCTCAGTGGGGAACAATATCTTGA 3021 0.3985 MNGKPDAYSLISCAAFAIMSLSSSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFILGAGFSYSLIILRSFLSSIDARVDDQYSQLQDGNSVVLCMDSLQLTNTDIASVSSSNSIDSPQLVITTDISSVMEKLGTFVKELREENLNFIEMLLNHVLHSQFVATDPNFMMDALKQETIKGLEETAKVMVSAGFEKEFSDVYNNCRMECLQECLLHILNTVKKLSSEDVHIMPRKRKDLKDEIKIWIRAFNVTLKIVFPGERQLCDRVLSGFSSAADFSFIEICRGSTILLLTFADSIATRSCSPEGLFNIIEVFETFRDLIPEFESLFCSQNSVSLKNEAITTWKIFRKVIKDIFMGLENFIDKGLMMETYLSSGLHPITQQVMNYLRVVSKSKKTLEQVFEDSSFSGMIHRIMDILESNLEIKAKCYEDPSLGYIFLMNNNTDIVQMTKDNELGILLGDEWYRKYTLKISQYQKFLGTMSPTLVQDFLQLLYNKQQINKIDEWNVKGSKGAKAYKGDVHEIKASLSQPPESRKMKPEAEIKTIVLISPPPVTGNLDKMPPKDGFTWRKYGEKEILGFKYSRSYYRCSHMKLDACRAKKKVQQLGDNPNVFEVTYNGAHSCRISLTMVHIAAPEDGGYHPMMDNIGDYLTGSLQIVSPIRSQDVSQTTMPASTSYSEWLSSRMPAKYIDSIPTAKLAAPDDGGHHPMMENVIGFLLSAIRSQVSISCESQQTEAVIGEKAFSPQMEGTMELLESILASKSGKYVDESLRHFFMMNNWRIKVQQKLELYQRESWDKVLEFLKLDIINDSKEINFSIDLMKEKLRLFNMHFTETCRIQCTWSVHDEMLRGEIISSLKNILLPAYGIFIGKFQDSLKDKAYKYIEYGMFDIHDVLDNLFLGTKKYKYRYSGIDDLLTIPSKGWLAHDAEQQSSILEKLNSNSGIRSHIVSNTSRTLNNLSGDLLPKAIASAKFSSRSVDSLQTPVNDISAAEENPKKPDRIIAAQWGTIS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03840 1006 SUPERFAMILY Cullin repeat-like 696 895 IPR016159 -
Trre9g03840 1006 Gene3D WRKY domain 550 622 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03840 1006 SUPERFAMILY WRKY DNA-binding domain 556 621 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03840 1006 SUPERFAMILY Cullin repeat-like 126 474 IPR016159 -
Trre9g03840 1006 Pfam WRKY DNA -binding domain 561 621 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03840 1006 SMART WRKY_cls 560 622 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03840 1006 Gene3D Exocyst complex component Exo70 687 777 - -
Trre9g03840 1006 Gene3D Exocyst complex component Exo70 778 898 - -
Trre9g03840 1006 Pfam Exo70 exocyst complex subunit 244 475 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03840 1006 Pfam Exo70 exocyst complex subunit 779 892 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03840 1006 Pfam Exo70 exocyst complex subunit 692 777 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03840 1006 ProSiteProfiles WRKY domain profile. 562 623 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03840 1006 PANTHER EXOCYST COMPLEX PROTEIN EXO70 119 474 IPR004140 GO:0000145|GO:0006887
Trre9g03840 1006 Gene3D Exocyst complex component Exo70 117 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03840 Trre-Chr9 46675724 46681886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03840 693 898 EXO70 exocyst subunit family AT5G58430 38.034 8.30e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03840 Exo70 4.4e-52 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03840 K07195 - cam:101500706 924.465