Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03839 ATGAATGCGCTGTTGAAACCAATAGAAAATTTGAATCTTTTGATGGATGTGGTGCCACCTGAAACAATAAAAAACCTTAATGAAACGACAAAGTTGATGGTGAGCACTGGTTTTGAAAAGGAGTGCTATAATGTGTACAGCAGTTGCCGGAGGGAATGGTTGGAGGGCCTAATTAAACAATTATTAGGTTTAGAGAATCTTACTATTGAGGACATTAACAAGATTTCATGGAATGATCTTAGTGACCAGATTAGAAGATGGACTAAGGCTTCAAAGGTCGCTCTCAAGATATTGTTCTCCGGCGAGCGACAACTCTGCATTCTTGTTTTCTTCGGATTTTCCACAGTCACCGATCTCTCCTTCATGGAGGTTTGTAGGGGAAGCACTAATTATTTGCTGAATTTCGGTGATGCAGTAGCAAATGGAAGTCGTTCGTCTGAGCGATTATTTATATCCTCGAGATGTTTGAAACATTGCGTGACCTAG 486 0.4033 MNALLKPIENLNLLMDVVPPETIKNLNETTKLMVSTGFEKECYNVYSSCRREWLEGLIKQLLGLENLTIEDINKISWNDLSDQIRRWTKASKVALKILFSGERQLCILVFFGFSTVTDLSFMEVCRGSTNYLLNFGDAVANGSRSSERLFISSRCLKHCVT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03839 161 SUPERFAMILY Cullin repeat-like 12 151 IPR016159 -
Trre9g03839 161 PANTHER EXOCYST COMPLEX PROTEIN EXO70 15 150 IPR004140 GO:0000145|GO:0006887
Trre9g03839 161 Pfam Exo70 exocyst complex subunit 86 151 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03839 161 Gene3D Exocyst complex component Exo70 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03839 Trre-Chr9 46672512 46672997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03839 6 150 EXO70 exocyst subunit family AT5G58430 56.552 1.46e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03839 K07195 - psat:127118479 185.267