Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03838 ATGAAGCACATTATAATCCAAATTCAAAGACGGCTTATGCATACAAATGTATGGAGAGTTGTGGGCTTCACTTCAGCTGTTGTTGGATTGCTCATGAAGATTAAGTTGCAGTTATTCATTGTTGGAGCTGGTTTCAGCTATTCCCTTGTTATTCTTCGTTCTTCCTTTCCTTCCATAGACGCAGGGCGAGATAATGAGTACCCTGAAATTCAAGATGAAAATTCAGTAGTCGTTCATGTCATTTCACCACACTTAGGTAGTACTGATATTGCTAGCAGCATGGTGGAACAACTCAGGACTTGTGTGTATGCAATTCAGAAGGAAAATTTTCATGTCATCGACACACTTTTGGAACAGCTAAAGGAATACTTTGTTGATGCATCTGAATTGGTGTTATCTCAAGGCAGCATGAGGGAGTCGTTCAAACAAATAGAAAATTGGAATCTTTTGATGGATGTGGTGCCACCTGAAACAATAAAAAACCTTCATGAAGCGACAAAGTTGATGGTGAGCACTGGTTTTGAAAAGGAGTGCTATAATGTGTACAGCAGTTCCCGGAGGGAGTGGTTGGAGGGCCTAATGGAACAATTATTAGGTTTAGAGAATCTAACTATTGAGGACGTTAACAAGATTTCATGGAATGATCTTAAGGACCAGATTAGAAGATGGGAAAAGGCTTCAAAGGTCGCTCTCAAGATATTGTTCCCCGCCGAGCGACAACTCTGCAATCTTGTTTTCTTCGGATTCTCCACAGTCACCGATCTCTCCTTCACAGAGGTTTGTAGGGGATGCACTAATTATTTGCTGAATTTCGGTGATGCAGTAGCAAATGGAAGTCGTTCGCCTGAGCGATTATTTAAAATCCTCGATATGTTTGAAACATTGCGTGACCTAGTTCCGGAGTTTGAGTCTCTATTTTGTGATCAGTACAGTGTATCGCTAAGGAATGAAGCAAACACAATTTTGAAGAAATTGGCAAAAGCAATAGTGGAAATTTTAATGGAGTTGGAAAATATGATTCACCAAGATCTTTCTAAGGTGGCAGTTCCTGGTGGAGGGATTCATCCCATTGTTCGTTACATTATGAACTACCTCAGACTCACCTGTGAATATCGACAGACACTGGAGCAGGTGTTTGAAGACCATAGACATCTGTTGAAGGAATACCCCAAACTTCATGATAGTGTGCCCTCCTCTTCCTCTCTCTCACTGCATATGGATCGAATTATGGAGGCATTGGAGATCAATACATACAAGATGAAACATAACGATATAAGTAAACTACTTTTATCGGATAATGTGATTCAAAAACACAAAGCAAAAGTTTTGTACAACTATGAGCAATATCAGAGAAGTTCATGGAATCAAGTGATGGAATTTCTGAAGTTGGACAACAATGGATCAGTGTCTCCTAAAATGTTAGTGAAATCAATGAAGAAGAAGCTCAACTCTTTCAACATACTTTTCGAGGAAATATGCAGGGTTCAGTCTTTGTGGTTTATCTTGGATGAGCAGCTTAAGGAAGAGATCATAATTTCTATTAAGAAAAATTTGTTACCGGCATACGGAAATTTCATTGGGATGTTCCAGAAGAGTGTTAAGAATAATGGAAAGCATGCTGACAAATATCTTAGGTATGGAATGGATGATATAGAAGCAAAACTCGGCGATTTGTTTCATGGAAGTAGTGCATCAACAGATAGCCGAAAGCAAAGCTAA 1719 0.3933 MKHIIIQIQRRLMHTNVWRVVGFTSAVVGLLMKIKLQLFIVGAGFSYSLVILRSSFPSIDAGRDNEYPEIQDENSVVVHVISPHLGSTDIASSMVEQLRTCVYAIQKENFHVIDTLLEQLKEYFVDASELVLSQGSMRESFKQIENWNLLMDVVPPETIKNLHEATKLMVSTGFEKECYNVYSSSRREWLEGLMEQLLGLENLTIEDVNKISWNDLKDQIRRWEKASKVALKILFPAERQLCNLVFFGFSTVTDLSFTEVCRGCTNYLLNFGDAVANGSRSPERLFKILDMFETLRDLVPEFESLFCDQYSVSLRNEANTILKKLAKAIVEILMELENMIHQDLSKVAVPGGGIHPIVRYIMNYLRLTCEYRQTLEQVFEDHRHLLKEYPKLHDSVPSSSSLSLHMDRIMEALEINTYKMKHNDISKLLLSDNVIQKHKAKVLYNYEQYQRSSWNQVMEFLKLDNNGSVSPKMLVKSMKKKLNSFNILFEEICRVQSLWFILDEQLKEEIIISIKKNLLPAYGNFIGMFQKSVKNNGKHADKYLRYGMDDIEAKLGDLFHGSSASTDSRKQS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03838 572 SUPERFAMILY Cullin repeat-like 117 560 IPR016159 -
Trre9g03838 572 PANTHER EXOCYST COMPLEX PROTEIN EXO70 131 416 IPR004140 GO:0000145|GO:0006887
Trre9g03838 572 Gene3D Exocyst complex component Exo70 87 569 - -
Trre9g03838 572 Pfam Exo70 exocyst complex subunit 420 556 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03838 572 Pfam Exo70 exocyst complex subunit 222 416 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03838 Trre-Chr9 46670108 46672247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03838 142 565 EXO70 exocyst subunit family AT5G58430 50.444 5.96e-148 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03838 K07195 - psat:127118479 644.425