Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03832 ATGATGCATATTCTAAATCAAATTGTGAGATGGTTGATGCAGCCAAAAGTGTGGAGATTTATAGGCTTTGCATCAGCTGTTGTTGGACTGCTCTGTTATGCTCTAAGCTCTTCCTTCAACTATCTCTTTGGAAATTGGAATTTGCTGAAAATATTTCTTTATAGTATTTTCAGTTTCATAATATGCTTGGTGATTTTATTTGCAAAATTATTTCAACATTCAAGAAGTCTCCGCTTCAAAGCTCATACAGCATTTTTGGTATTGACAATCACCTCTGTTTATTCCTTTTTCTTTGATAAAATTATGAATGGAAAACCAGATGCATATAGCTTGATTTCATGTGCTTCTTTTGCTATCATGTCATTGAGTTTGTCGAGGCAAACTCAATGCGGATTTGAAATCGATCTTCTCTATTTCTTCCTTGGATGTCTAATTGTGCAACTCATGAAGATCAAATTGCAGTTGTTCATTCTTGGAGCAGGTTTCAGCTACTCTCTTATTATTCTTCGTTCTTTTTTATCTTCTATTGATGCTAGAGTAGATGATCAATACTCTCAACTCCAAGATGGAAACGCGGTGGTTCTTTGTATGGATTCTCTACAACCGACTAATACTGATATTGCTAGTGTTAGTAGTAGCAATAGCATTGTTTCACCACAATTGGTGATCACTGATATTAGTAGTGTGATGGAAAAACTCGGGACTTTTGTGAAGGCGGTTCAACAAGAAAATTTAAATCTCATTCAAATGATTTTGGATCATGTAAGAAAATATTGTGAAGAACATTATCATTTGGTGGCGACCGATCCTAACTTCATAATGGATGCGCTGAAGCCAGAAACAATCAAAGGCCTTGAGGAAACAGCAAAGGTTATGGTGAGCACTGGTTTTGAGAAGGATTTTTCTGATGTGTACAACAGTTGCCGGAGGGAATGCTTGGACAATTTCCTAATGCATAGATTATTCAGGTTAAAAAAGCTCAACAGTGAGGACATTCACAACACGCCATGGAAGGATCTTGAAGATGAGACTAAAAATTGGATTAGAGCTTTCAATGTCACCCTCAAAATACTTTTCCCTGGTGAGCGACAACTCTGCAATCGTGTCTTCTCCGGGTTCTCATCTGCCGCTGATTTGTCCTTCATTGAGATTTGCAGGGGATCCACCACTCAACTTCTAAATTTTGCAGACTCTATTGTCACCGGAAGTCATTCTCCGGAGTGTTTGTTTAAAATCATCGAGGTGTTTAAAACATTGTCTGACCTAATTCCAGAATTTGAGTCCTTATTTTGTGATCATCAAAGCGTGTCTCTAAAGAATGAAGCAATTACTATATGGAAGAAATATGGGATAGCAATTAGAGCTATTTTCTTGGAGTTGGAGTATTTGATTGACCAAGACTTGACGACGGGGGCATATCTCAGCAGTGGTCTTCACCCGATTACCCAACATGTGGTGAACTACCTCCGTGTAGTTTCCCACTCTCGGCAAACACTAGAGCAAGTGTTTGACGATTCCTCACTTTCTGGGAAGATTCTTAATATTATGGACGTATTGGAGAGTAATTTAGAAGCAAAGGCCAAATACTACGAGGACCCTTCTTTAGGCTATATTTTCTTGATGAATAACAACACTTATATAGTTGAGATGACCAAAGATACTGAACTAGGAATCCTTTTAGGTGATGAATGGTTCCGAAAACACACACTGAAAATTTGGCACTACCATGAACAATATCAGAAAACCTTGGGCACTATGCCACCCATTTTAGTGCAAGATTTTTTCCCATTATTGTACAACAAACAACATATTAATAAAATACATGAGTGGAAAGGTTCGGAACGATCAAAGGCGTACAAAGGAAATGTGCCGGAAAGAGAAGCATCACTCTCTCAACAACCAAAAAGCAGGAAAATGATATCGGTGACAAAGATAAGAACAATAGTACTGCTCTCTCCTACACCACACGTCGAAAGCATAGATAAAATGCCACCGAATGACGGGTTTATTTGGAAAAAATATGGCGAGAAAGAGATACCTGGAGTCAAATACCCAAGGATTTACTATAGGTGCAGCCACATGAATTTATATGCCTGTCAAGCCAAGAAGAAAGTACAAAAACTTGGTGACAATCCAAACGTGTTTGAAGTAACATACAATGGTGCACATTCCTGCCGTATATCCTTGACAATACCATCATTATATTTAGCAGCACGAAGGATCTCAAAGAATATGACTCAAACCACCATGCCAGCATCAACTTCATATTCTGAGTGGCTTTCATCGGGCACGCCAGCCAAATACATAGACTCTATTCCAACGGCCAAGCTAGCTGCTCCAGAAGACGGTGGGCATCATCCTATGATGGACAACGTCGGGGACTATCTTGTTTCTGCTATCAGATCACAGCAGATTGTTTCTGCTATCAGATCCCAGCAGATCTATGCTGTTAATGGAGACGAAGCATTTTCACCACAAACGGAGGGGACAATGGAACTGTTAGAGAATATATTGGCATCGAAGTCCGAAAAATATGTGGATGCGTCTTTGCGTCATTTCTTCATGATGAATAATTGGAGGTATTTAGAAGTGACAAATAATAGAATGGAACTAGATGGAATGTTCGGCGATGTTTGGTTGCAAAGAAACAGAGAAAAAGTCCAACAAAAAATTGAACTCTATAAGAAAGAATCATGGGATAAGGTGTTGGAATTTTTAAAGTTGGATATAAATGACTCCATTGAAATTAATTTTGCAACAGATTTGATGAAAGAAAAACTCAATTTGTTTAACATACAATTTACAGAAACATGTAGAGTTCAGTGCACATGGTCTGTTCATGATGAGAAGCTAAGGAGAGAAATAATTTCATCTCTCAAACACATCTTGCTCCCAGCATATGGAACCTTCATTGGGAGGTTTCAGGATTTTCTTAAAAACAATGCTTACAAGTATATTGAGTATGGATTGTTTGACATTGAAGATGTACTTGATAGTTTGTTTCTTGGAAACAAGACAGATGAATGA 3027 0.3816 MMHILNQIVRWLMQPKVWRFIGFASAVVGLLCYALSSSFNYLFGNWNLLKIFLYSIFSFIICLVILFAKLFQHSRSLRFKAHTAFLVLTITSVYSFFFDKIMNGKPDAYSLISCASFAIMSLSLSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFILGAGFSYSLIILRSFLSSIDARVDDQYSQLQDGNAVVLCMDSLQPTNTDIASVSSSNSIVSPQLVITDISSVMEKLGTFVKAVQQENLNLIQMILDHVRKYCEEHYHLVATDPNFIMDALKPETIKGLEETAKVMVSTGFEKDFSDVYNSCRRECLDNFLMHRLFRLKKLNSEDIHNTPWKDLEDETKNWIRAFNVTLKILFPGERQLCNRVFSGFSSAADLSFIEICRGSTTQLLNFADSIVTGSHSPECLFKIIEVFKTLSDLIPEFESLFCDHQSVSLKNEAITIWKKYGIAIRAIFLELEYLIDQDLTTGAYLSSGLHPITQHVVNYLRVVSHSRQTLEQVFDDSSLSGKILNIMDVLESNLEAKAKYYEDPSLGYIFLMNNNTYIVEMTKDTELGILLGDEWFRKHTLKIWHYHEQYQKTLGTMPPILVQDFFPLLYNKQHINKIHEWKGSERSKAYKGNVPEREASLSQQPKSRKMISVTKIRTIVLLSPTPHVESIDKMPPNDGFIWKKYGEKEIPGVKYPRIYYRCSHMNLYACQAKKKVQKLGDNPNVFEVTYNGAHSCRISLTIPSLYLAARRISKNMTQTTMPASTSYSEWLSSGTPAKYIDSIPTAKLAAPEDGGHHPMMDNVGDYLVSAIRSQQIVSAIRSQQIYAVNGDEAFSPQTEGTMELLENILASKSEKYVDASLRHFFMMNNWRYLEVTNNRMELDGMFGDVWLQRNREKVQQKIELYKKESWDKVLEFLKLDINDSIEINFATDLMKEKLNLFNIQFTETCRVQCTWSVHDEKLRREIISSLKHILLPAYGTFIGRFQDFLKNNAYKYIEYGLFDIEDVLDSLFLGNKTDE 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03832 1008 Gene3D WRKY domain 656 728 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03832 1008 ProSiteProfiles WRKY domain profile. 666 728 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03832 1008 PANTHER EXOCYST COMPLEX PROTEIN EXO70 219 581 IPR004140 GO:0000145|GO:0006887
Trre9g03832 1008 Pfam WRKY DNA -binding domain 666 726 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03832 1008 SUPERFAMILY Cullin repeat-like 250 581 IPR016159 -
Trre9g03832 1008 SUPERFAMILY WRKY DNA-binding domain 661 726 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03832 1008 SUPERFAMILY Cullin repeat-like 777 1001 IPR016159 -
Trre9g03832 1008 Gene3D Exocyst complex component Exo70 766 1008 - -
Trre9g03832 1008 Gene3D Exocyst complex component Exo70 209 606 - -
Trre9g03832 1008 Pfam Exo70 exocyst complex subunit 774 998 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03832 1008 Pfam Exo70 exocyst complex subunit 345 585 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre9g03832 1008 SMART WRKY_cls 665 727 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03832 Trre-Chr9 46646765 46651743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03832 268 582 EXO70 exocyst subunit family AT5G58430 56.481 6.28e-109 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03832 Exo70 2.5e-60 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03832 - - cam:101500706 1193.33