Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03805 ATGGCTACAGAAGCAAGAGCGAAGTTCCAAAACCCAGATTTCCGACCCGATTTCCAAACCCTAACGCCGTCAACTCACGACGGTCTTCACTTCTGGCAGTTCATGATTGCTGGATCCATCGCCGGTTGCATAGAACACATGGCAATGTTTCCCGTTGATACCGTTAAAACTCATATGCAAGCAATCACATCATGTCCAATTCAATCCGTTTCAGTTCGTCAAGCTTTACGTTCAATTCTAAAATCGGAAGGTCCCTCGGCTTTATACCGCGGTATTGGTGCAATGGGGCTCGGCGCGGGCCCGGCACACGCCGTTTATTTTTCGGTTTATGAGACTTGTAAAAAAAAGTTCTCACAAGGGAACCCTAATAATGCTGTTGCTCATGCTGCTTCTGGTGTTTGCGCCACGGTTGCGAGTGACGCGGTTTTTACGCCAATGGATATGGTGAAACAGAGGTTGCAGTTGAGTAATAGTGGTTATAAAGGTGTTTTTGATTGTGTTAAGAGGGTTATGAGTGAGGAAGGGTTTGGTGCTTTTTATGCTAGTTATAGGACTACTGTTTTGATGAATGCGCCTTTTACGGCTGTGCATTTCGCGACTTATGAGGCAGTGAAACGGGGGTTGAATGAGGTTTCTCCGGAGAGTGTTGATGATGATCGGTTGATTATTCATGCTACGGCTGGTGCTGCGGCGGGTGGTTTGGCTGCTGCTGTTACAACACCACTTGATGTTGTTAAAACTCAACTGCAATGTCAGGGTGTATGTGGATGCGATAGGTTCAAAAGTGGTTCAATCGGTGATGTTATTAAAACAATAGTGAAAAAGGATGGATACAAAGGGCTCATGCGAGGATGGGTTCCAAGGATGCTCTTTCATGCTCCTGCAGCCGCAATTTGCTGGTCTACATATGAAGCTGGAAAATCTTTTTTCCAAGATTACAATGAGCAGAAAGATACCGGAACCATCACCTAA 972 0.4558 MATEARAKFQNPDFRPDFQTLTPSTHDGLHFWQFMIAGSIAGCIEHMAMFPVDTVKTHMQAITSCPIQSVSVRQALRSILKSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKKFSQGNPNNAVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSGYKGVFDCVKRVMSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAVKRGLNEVSPESVDDDRLIIHATAGAAAGGLAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIKTIVKKDGYKGLMRGWVPRMLFHAPAAAICWSTYEAGKSFFQDYNEQKDTGTIT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03805 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 207 IPR018108 -
Trre9g03805 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Trre9g03805 323 PANTHER MITOFERRIN-1-RELATED 24 312 - -
Trre9g03805 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 309 IPR018108 -
Trre9g03805 323 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Trre9g03805 323 Pfam Mitochondrial carrier protein 124 210 IPR018108 -
Trre9g03805 323 Pfam Mitochondrial carrier protein 29 119 IPR018108 -
Trre9g03805 323 Gene3D Mitochondrial carrier domain 12 159 IPR023395 -
Trre9g03805 323 FunFam Mitochondrial carrier protein, expressed 124 318 - -
Trre9g03805 323 SUPERFAMILY Mitochondrial carrier 27 304 IPR023395 -
Trre9g03805 323 PRINTS Mitochondrial carrier protein signature 180 198 IPR002067 GO:0055085
Trre9g03805 323 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Trre9g03805 323 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Trre9g03805 323 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Trre9g03805 323 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Trre9g03805 323 Gene3D Mitochondrial carrier domain 160 323 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03805 Trre-Chr9 46460775 46463722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03805 1 318 Chloroplast and Mitochondria Gene Families AT2G30160 72.948 7.13e-169 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03805 K15113 - gmx:100802640 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03805 9 46460775 46463722 Trre9g03805 9 46460775 46463722 ECH