Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03798 ATGAGATACACTTCATCCCTTAGAAGTCCAAAGAAAGAAGAGCATGAAGTACCACAAATTATCACTCCAACACTACCAAACTTCAACAAATCTTACACTCATGAAGATTTCTATATTTTTGACGAACTCGAAGAGTACTTGAACGAAGAAGAAGATGAAGACGAACAAAAGTTATCGCCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATTTAATGGAATGGGAAGAATTTTCCTTTGTTGAAGGGAAAGATGAGAACATAAGCAAATGCAATTTTGATGAGAAGAAGATTATTAAGAGAGAAAATTACAATGATGGATTTTGGGAAGTGGATGATGAAAAGATTGTGGCTTTGAATTTGAATTTAAACTATCAAGAAGTTTTGGATGCATGGTCTAACCGTGGTTCTCTATGGGCTGATGATTGTTCTCTTAATTCATTGTCCTCTTCCAATAATTGCTCCTATATGGGAGAAGTGCCAATATTGGAAGAAGAAAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTACAAAGAAAAACGTCAGAACAGATTGTTTTCCAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGACGCTTTGTGAAGAGACACTAA 648 0.3534 MRYTSSLRSPKKEEHEVPQIITPTLPNFNKSYTHEDFYIFDELEEYLNEEEDEDEQKLSPQNTCNSSNELHWDLMEWEEFSFVEGKDENISKCNFDEKKIIKRENYNDGFWEVDDEKIVALNLNLNYQEVLDAWSNRGSLWADDCSLNSLSSSNNCSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03798 215 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 44 214 - -
Trre9g03798 215 ProSiteProfiles CCT domain profile. 172 214 IPR010402 GO:0005515
Trre9g03798 215 Pfam CCT motif 172 214 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03798 Trre-Chr9 46427461 46429084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03798 91 214 C2C2-CO-like Transcription Factor Family AT1G73870 41.844 4.33e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g03798 CCT 2.1e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03798 - - cam:101495184 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03798 9 46427461 46429084 Trre9g03798 9 46427461 46429084 ECH