Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03788 ATGGCAACAACACTAGAGTGTTGGTCAAGCCGCACCACCACCACAACAACCACCACCACCAATGACGACACAGTTGAACAACAACAAGTTCTTATGAGAACACACCACAGATCCGAACTTTCTTCTTCTTCTTCTTCCATTACTTCTCTTTCTCTTCCTTCCAAAGACTCATCATCAATTCTAATTCACAACAAGAACAAGTTTCATAAACTCAGTCGCAATTTCTCTGATGCTATTACTTCTTTCAAAAACACTCTCAATTTCAACAATAATAACAACAATACTGAATCTATTACTTCTTCTAAGAAACTTGCTTGGGCTTCTGTTCTTCGTAATCTTACTCAACTTTACCCTGTAACTCAATTACCTGATAACCTTATATCTACTATTCGTAATCATTATCATTCTCTTCCTCTCAGTTATGCACAGGCAGAATTTGATATGAAGGATGTGTTTCTTCACATCAAGTTGATGGATCAGGCAATGGAAAGTGATCTGCCTGCGATTTTGATTCAACAACAATGCGGTGACGGCGAGATTCAGGTTCAAGGGTCTGCATTGAAGCTCACTTTTGCTTGCAATTTTCTTATTTCATGGTCTGCTATGTCGGTTGTGTTGGACAGTTTCTCCATTTGTAGCAAGAGACCACAGATATTTGAGAAGAAAGGTTTCACCTTAGGGGTTGTTCTTCTCGTTGTTAGGTCCGGGCATGAAAAATTGGTCAAGACCCGAGTTGAGAATGCTTTGAAGTTTGCTTTAAAGAAGCCTAAAAACAATGCTGTGAATGTAAAGCTTTCATTTGGACTTTGTGGATGTCAGGAAGAGAGTTTCAAGGGGAGAGAACTAGGGGAGATTGGAGAAGATAGTGGTAGCGGAAAGGAGTTTGAGAATTCTAACCAAAAGATTCAGCTTCAAATGCCTTTGCCTACCTCATCTTTCATTGTATCGGTAGATGAATGGCAGACGATAAAGTCAGGTGGCGATCAGATTGCAAAATGGTTGTTAAATGCAGATAGTGTTGAGTTTACAGAACAGATTGGACCCAACTATTATAAAGGAGTCTACATGGGGAAAAGGGTCGGAATTGAGAAGCTTAAAGGGTGTGAAAAAGGAAATTCTTACGAGTTTGAGCTCCACAGAGATCTTCTAGAACTGATGACTTGTGGACATAGAAACATTCTGCAGTTCTGTGGTATTTGTGTGGATGATAATCACGGCTTATGTGTGGTGACGAAGTTCATGGTACGTGGGTCAGTCCATGACTTAATGCTAAAGAACAAGAAGCTTCAGAGTAAGGATATTGTTAGAATCGCAGTTGATGTAGCTGAGGGGATCAAGTTTATGAATGACCATGGTGTTGCATATAGAGACCTTAACACGCAGAGGATTCTATTAGATAGGCACGGGAATGCTTGCTTGGGAGATATGGGTGTAGTCACTGCCTGCAAGGGTGTTGGTGAAGCAACGGAGTATGAAACCGATGGTTATAGGTGGCTAGCTCCTGAGATAATTGCAGGAGACCCCGAGAGCGTGATAGAGACATCTATGAGCAACATTTATAGTTACGGGATGATAATTTGGGAGATGGTAACTGGTGAGGCAGCATATTCTACCCTTTCTCCTGTGCAGGCTGCAGTTGGTATTGCTGCTTGTGGTCTTAGACCTGAAATTCCCAAGGACTGTCAACCTAATCTAAGATATATTATGACAAAATGCTGGAACAACACCCCTTCCAAACGTCCGAAATTCTCCGATATTTTAGCCATATTGCTGCAACCATACAACAACAATAGGTAA 1797 0.4107 MATTLECWSSRTTTTTTTTTNDDTVEQQQVLMRTHHRSELSSSSSSITSLSLPSKDSSSILIHNKNKFHKLSRNFSDAITSFKNTLNFNNNNNNTESITSSKKLAWASVLRNLTQLYPVTQLPDNLISTIRNHYHSLPLSYAQAEFDMKDVFLHIKLMDQAMESDLPAILIQQQCGDGEIQVQGSALKLTFACNFLISWSAMSVVLDSFSICSKRPQIFEKKGFTLGVVLLVVRSGHEKLVKTRVENALKFALKKPKNNAVNVKLSFGLCGCQEESFKGRELGEIGEDSGSGKEFENSNQKIQLQMPLPTSSFIVSVDEWQTIKSGGDQIAKWLLNADSVEFTEQIGPNYYKGVYMGKRVGIEKLKGCEKGNSYEFELHRDLLELMTCGHRNILQFCGICVDDNHGLCVVTKFMVRGSVHDLMLKNKKLQSKDIVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGVVTACKGVGEATEYETDGYRWLAPEIIAGDPESVIETSMSNIYSYGMIIWEMVTGEAAYSTLSPVQAAVGIAACGLRPEIPKDCQPNLRYIMTKCWNNTPSKRPKFSDILAILLQPYNNNR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03788 598 MobiDBLite consensus disorder prediction 35 54 - -
Trre9g03788 598 ProSiteProfiles Protein kinase domain profile. 340 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03788 598 Pfam Protein tyrosine and serine/threonine kinase 375 589 IPR001245 GO:0004672|GO:0006468
Trre9g03788 598 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 59 590 - -
Trre9g03788 598 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g03788 598 SUPERFAMILY Protein kinase-like (PK-like) 319 590 IPR011009 -
Trre9g03788 598 Gene3D Transferase(Phosphotransferase) domain 1 333 595 - -
Trre9g03788 598 PRINTS Tyrosine kinase catalytic domain signature 411 424 IPR001245 GO:0004672|GO:0006468
Trre9g03788 598 PRINTS Tyrosine kinase catalytic domain signature 447 465 IPR001245 GO:0004672|GO:0006468
Trre9g03788 598 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672|GO:0006468
Trre9g03788 598 PRINTS Tyrosine kinase catalytic domain signature 561 583 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03788 Trre-Chr9 46333794 46337692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03788 323 592 MAP Kinase Kinase Kinase AT2G17700 33.213 4.60e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Trre9g03788 PK_Tyr_Ser-Thr 7.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03788 - - pvu:PHAVU_008G258400g 889.797