Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03771 ATGCTTAGCCAACCCAACTCAGTAAACTCGTCCACTAACCCACTGAGTCAACTCGTTCAGAACATGTTCTCCGACAACAGCAACAACAACAACAGCATCATCATGCTAGCAGCAATCATTTCTCTTCTCCTAGTAATCCTCTTTGTCCTCCTTCTCCACATCTATGCCAAATGGTTCCTATCTCAGTCCAACTCAGAGACAAATACTCGCCGCCGGCAAACTCCAGTGAACATCTCCGACATTCCATTTACTTCCAATTTCCACCACCATTTCAACATTGGAAGATTCGAAAGACAACCCAAAGGACTTGACTCAACAATAGTTTCGACAATTCCAACGTTTGTGTCGGAAGAAAAAACAGAGGAATTAGAATGTGTGATTTGTTTGAGTTATATTGAAAAGGGTGAGGTTGGAAGAAAGTTACCAAAATGTGGACATGTATTTCATGTTGAATGCATTGATATGTGGTTGAATTCACATTGCAATTGTCCAGTTTGTAGAGATTTGATTGTTGAGAATGATTCTCATGGTGGTGGTGTTGTTGTTGAGATTGTGATTGAAAGTTCAAGTGGTTCTTCTGTTTCTGTATCAGAAAGTTCTTCTTTGTCTTTGTTTGGTTTCTCTTTGAAGAGAATTCTTAGCAAAGTTTTTCTTTCTTCTCATGTAAATGAATTAGATGATGGTTCATAA 690 0.387 MLSQPNSVNSSTNPLSQLVQNMFSDNSNNNNSIIMLAAIISLLLVILFVLLLHIYAKWFLSQSNSETNTRRRQTPVNISDIPFTSNFHHHFNIGRFERQPKGLDSTIVSTIPTFVSEEKTEELECVICLSYIEKGEVGRKLPKCGHVFHVECIDMWLNSHCNCPVCRDLIVENDSHGGGVVVEIVIESSSGSSVSVSESSSLSLFGFSLKRILSKVFLSSHVNELDDGS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03771 229 CDD RING-H2_EL5-like 124 167 - -
Trre9g03771 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 171 IPR013083 -
Trre9g03771 229 Pfam Ring finger domain 124 167 IPR001841 -
Trre9g03771 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 175 - -
Trre9g03771 229 SUPERFAMILY RING/U-box 114 173 - -
Trre9g03771 229 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Trre9g03771 229 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03771 Trre-Chr9 46142716 46143405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03771 31 223 C3H Transcription Factor Family AT2G42360 32.407 1.06e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03771 - - psat:127118511 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03771 9 46142716 46143405 Trre9g03771 9 46142716 46143405 ECH
Trre5g00376 5 2382410 2383189 Trre9g03771 9 46142716 46143405 PCT