Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03754 ATGGATACAAGCATGTTGGGATTGACTTCATTCTCTTGCTACACAACACCAAACCGTTCTCGTCTAAATCTTAGGTCATCATTGTCTATGCGACATGAATATCCTCTTGCAAGCAAAATCATTGTTAAAAATTTACCTTATTTTACCCGCGAGACTGCTCTGCAAAAGGAATTTTCAAATTTTGGCAAAATAGCTGAAGTTCAAATGGTTAAAGATGAGATCACGAAAAGATCAAAGGGACTTGCTTTTATTCAATACACATGTCAAGATGATGCCGTGCTTGCAATAGAAAACATGGATCAAAAGAATTTTTATGGACGGACGATTTCTGTAGAAATTGCAAAACCCGGTTGGGATCATTTTGGTATACCTCCAAGGGCCTCTGGGCCGCCAAAGAAGTGGAATTTACCCGAAGAGCAAGGAGAAGAGGTAGATTGTTGGTACTGA 447 0.3937 MDTSMLGLTSFSCYTTPNRSRLNLRSSLSMRHEYPLASKIIVKNLPYFTRETALQKEFSNFGKIAEVQMVKDEITKRSKGLAFIQYTCQDDAVLAIENMDQKNFYGRTISVEIAKPGWDHFGIPPRASGPPKKWNLPEEQGEEVDCWY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03754 148 SMART rrm1_1 39 112 IPR000504 GO:0003723
Trre9g03754 148 Gene3D - 18 142 IPR012677 -
Trre9g03754 148 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Trre9g03754 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Trre9g03754 148 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 116 - -
Trre9g03754 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03754 Trre-Chr9 45986931 45990287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03754 24 119 Eukaryotic Initiation Factors Gene Family AT2G36660 31.000 1.22e-07 47.8