Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03739 ATGGAGATTAATGGAGGTGATAAGAGTAATGGAAATCGAAAACGGAAAAGAGGGTCGTTGAAAAGAAAGCTTCTAGTTAATGAAAAAGTTGAGTTGAGGAGTTTGGAAGATGGTTTTTTGGGATCATGGCATCCGGGAAAAATTGTTCGTTGTGGGAGGAAGAAGCGATATGTCAAATATGACAATATCCTCAATGATGATGAATCAGATTATCTTGTTGAAGTGGTGAATGTTTCTAGTGTTTTGGATGGTGTTAATCCTTCATCTGGTTCAGATTGTGTCTATGAACGCGGCCTAATTAGACCATTGCCTCCTCCAATTGAGTTACGGATGAAAGATCTTCCATTTGGACTCTGTATTGATGTGAATTATCAAGATGCTTGGTGGGAAGGTGTGATATTCGATCACTGTGATGGAACGAAGGAGAGGAGCATATTCTTCCCTGATTTGGGTGATGAAATGAAGGTTGCAGTTAAACAATTGAGGATCACTCAGGATTGGGATGAATCAACTGAGAATTGGTTACCAAGAGGGAAATGGATTTTTCTTGAGTTATTTGAGGAGTGTGAGAGGGCTTCCTATGTTGCTGTCTCGGTGAAACAGATTTGGTATGATGTTAGGATGAGAAAGGATTTTGCTGAAACCATTAAACAATGGACTTGTAATGTGAAGGAGTTGTGGAGAGACATGGTTGTCGAGGTGATTGGTGATTACTATACCCTCACTCTAAATGAAGTTCGCCTCGCATTAAACCTTCCGAAGAATTTACTCGAAGGAGGGTCATTTGAACTATCTGATAATGTTCATTGTGATGTTGCTAGTCATGGTAATGCAATTGGTTCTGACATAGCTAATAGGCCCAAGGAAAATGGCGACTCCTCAAACATGTTGGATGCTGATCAAAACATCCTGGATGGGGAAGTTGAGAAGGAAAGTCTTTTACATGAAGAGTCTGAATCACAAAAAGAAATTTCCCGCTATCGGGGTGATATAATAGATTCGGATAAAAACCGAAGACGCAGACGCTCTACGTCAATAATTTGGAAACCTTTGATACTATCTGAAGTTGAATTCTGTCCTGAAGTTATTAATGAGTATGCAGCTGGATGTAGGAGCAAGACGGTTCGAGAACATTTGAAGACGAAAGTTAGAAAACATCTTGCATATCTTGGATGGACAATTGAATGGACCGAAAACAACTGTCCTCAAAATAGACGGTACAGGTACAAGTCACCGGATATACGTGACCAGAAGTTTTACACTTCAATTTTTAAGGTTACTAAAGTTTTGCAAGAGGATTCCAACATGAACTCTGTGCCACCCCAAATTGGCGGAAATCTTTCACCTCTTATTTGTGATCCACCACAAATGGACCGAGATTTGGATGTTTGTCCTCCGACTAAGGATCCTTCTACAATTAATATTCAAGCTGAGCCAGAATTATGTCCTCTAGCCATCGTGAAATACTACTTTCACTCATTAGAGAGAAACTCGGCTGATAAGATAAAGTGGAAGTTGAAGGCGAAAAAACATCTGTTAGCAGAAGGATGGATCTTTGACTACCCAACTGAAAGAAGGAAGACAACTTTGTACAAGTCTCCACAGAATCAGTGTTTAGGTACACTTCAAGGTGCATGCAGACTATACCTTAAAGAAAAAATTCCTGAATGGACTAATTCTGATCAAGTTAATGGTGATGATCTATTGCCGAGTGTGTTCCAATTGCTTCAAAAGGAGCCTGAATTACATACTATAGATGGTACACCACCAACTTCAAAGAGAAACCATAAACGCACAAGGACTTCAAAGGCTAGCACACAAAAGGGCTCAGAGAATGAAGTACCTACTCGGGTGCTAAGATCGAGCAAAAGGGTGCAGAAGGCTTTGGGTTTGTCACATCAAAAGCCACAAAATGTTTTGTCTTGGTTAGTAGATTACAACATTGTGTTACCAAAATACAAGGTCTTTTACCGGGAAATAGAAGGAGAAGGAAACTCCCCCACGGCTGAGGGGAGGATAACCCGTGAAGGAATCAAATGCAACTGTTGTCAAAACATATATGGACTCAGCGGCTTTGCAAACCATGCTGGTGGAAGTAGTAACTGCAGACCTTCGACTTGTATCTTTTTGAAGGATGGTAGGTCGCTGTTAGACTGCATGAGGGAAGTAATGCAAGATCACAAGGCAAGGGAAGTCATGGAGGAACCATGCAATTATCTGTTTGAAGGCGAAAATGACAACATTTGTTCTGTTTGTAATTACGGTGGTGAACTTATTTTATGCGACCAATGCCCCTCAGCATTTCATAAGAATTGTCTTAATTTGGAGGACATCCCTGATGGTGATTGGTTTTGTCCATCATGCCGTTGCGGGATTTGCAGCCAGAACAAAATTGAAAAGACCGAGGATGGACATTTTCTTACTTGCATTCAGTGTGAACATAAATATCATGTTGTGTGCCTCAGAAATAGAGAAAACGATAATTCAAGACGATATCAGGAAAATTGGTTTTGCGGAGAAGAGTGTGTAAGGGTGTATATGGGGCTTCAAAATCTATTGGGAAAGCCGGTTTTAGTGGGTGAGGACAATCTAACATGGACATTGTTGAAGTATGTCAACTCTGAGAATAGTGGTGTTAGCAATGCTGAAAATGACTTAGTAGCAGAGAGTTACACTAAACTCAGTGTTGCACTTTCGGTGATGCACGAATGTTTTGAGCCCTTACATAACTCGTTCTCTAGCAGGGATATCGTGGAAGATGTTATATTCAACCAAAGGTCTGAGCTCAACCGGTTGAATTTCCAGGGTTTCTATACCATACTTCTAGAGAGAAATGAAGAGTTGATTAGTGTGGCAACTATTAGGATATTTGGAGAGAAGATAGCAGAAGTGCCACTTGTCGGTACAAGATTTCAGTATAGACAACTTGGAATGTGTCGTGTTTTAATGGATGAGCTTGAAAAGAAACTAAAGCAACTGGGAGTGGAGAGACTAGTCTTACCTGCTGTTCCTGGTGTGCTTGAAACTTGGACCAGTTCTTTTGGTTTTAAGCAGATGACAAACTTCGAGCGATCCCAGTTTTTGGACTACTCATTCCTAGATTTCCAAGGAACAGTGATGTGTCAGAAACTGTTGTCAAGACATACATCTCTGGAGTCAGATGTGACTAGAGACGCAACAACTCCGAGACAAGATGGTGGCTTTTCTGTAAAATGTAAAATTAATTTTGAAAAGGCTAGTCCGGTTTATGAAGCCGATCAAACTGAAGGGATTGACACGAGTAGTACAAAGGATTTACAAGTTTGGAGACCAATGCCTGATTTCTAG 3327 0.4058 MEINGGDKSNGNRKRKRGSLKRKLLVNEKVELRSLEDGFLGSWHPGKIVRCGRKKRYVKYDNILNDDESDYLVEVVNVSSVLDGVNPSSGSDCVYERGLIRPLPPPIELRMKDLPFGLCIDVNYQDAWWEGVIFDHCDGTKERSIFFPDLGDEMKVAVKQLRITQDWDESTENWLPRGKWIFLELFEECERASYVAVSVKQIWYDVRMRKDFAETIKQWTCNVKELWRDMVVEVIGDYYTLTLNEVRLALNLPKNLLEGGSFELSDNVHCDVASHGNAIGSDIANRPKENGDSSNMLDADQNILDGEVEKESLLHEESESQKEISRYRGDIIDSDKNRRRRRSTSIIWKPLILSEVEFCPEVINEYAAGCRSKTVREHLKTKVRKHLAYLGWTIEWTENNCPQNRRYRYKSPDIRDQKFYTSIFKVTKVLQEDSNMNSVPPQIGGNLSPLICDPPQMDRDLDVCPPTKDPSTINIQAEPELCPLAIVKYYFHSLERNSADKIKWKLKAKKHLLAEGWIFDYPTERRKTTLYKSPQNQCLGTLQGACRLYLKEKIPEWTNSDQVNGDDLLPSVFQLLQKEPELHTIDGTPPTSKRNHKRTRTSKASTQKGSENEVPTRVLRSSKRVQKALGLSHQKPQNVLSWLVDYNIVLPKYKVFYREIEGEGNSPTAEGRITREGIKCNCCQNIYGLSGFANHAGGSSNCRPSTCIFLKDGRSLLDCMREVMQDHKAREVMEEPCNYLFEGENDNICSVCNYGGELILCDQCPSAFHKNCLNLEDIPDGDWFCPSCRCGICSQNKIEKTEDGHFLTCIQCEHKYHVVCLRNRENDNSRRYQENWFCGEECVRVYMGLQNLLGKPVLVGEDNLTWTLLKYVNSENSGVSNAENDLVAESYTKLSVALSVMHECFEPLHNSFSSRDIVEDVIFNQRSELNRLNFQGFYTILLERNEELISVATIRIFGEKIAEVPLVGTRFQYRQLGMCRVLMDELEKKLKQLGVERLVLPAVPGVLETWTSSFGFKQMTNFERSQFLDYSFLDFQGTVMCQKLLSRHTSLESDVTRDATTPRQDGGFSVKCKINFEKASPVYEADQTEGIDTSSTKDLQVWRPMPDF 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03739 1108 SUPERFAMILY FYVE/PHD zinc finger 728 789 IPR011011 -
Trre9g03739 1108 CDD PHD2_CHD_II 749 788 - -
Trre9g03739 1108 CDD Tudor_Agenet_AtDUF_rpt1_3 26 105 - -
Trre9g03739 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 790 IPR013083 -
Trre9g03739 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 845 IPR013083 -
Trre9g03739 1108 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 930 1029 IPR016181 -
Trre9g03739 1108 Gene3D - 877 1048 - -
Trre9g03739 1108 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 884 1045 IPR000182 GO:0016747
Trre9g03739 1108 SMART PHD_3 748 789 IPR001965 -
Trre9g03739 1108 SMART PHD_3 790 842 IPR001965 -
Trre9g03739 1108 Pfam Tify domain binding domain 671 722 IPR032308 -
Trre9g03739 1108 ProSiteProfiles Zinc finger PHD-type profile. 746 791 IPR019787 -
Trre9g03739 1108 PANTHER PHD FINGER PROTEIN 12 488 1088 IPR042163 GO:0003714|GO:0045892
Trre9g03739 1108 SMART agenet_At_2 112 169 IPR014002 -
Trre9g03739 1108 SMART agenet_At_2 22 90 IPR014002 -
Trre9g03739 1108 Pfam Agenet domain 28 105 IPR008395 -
Trre9g03739 1108 Pfam PHD-finger 748 790 IPR019787 -
Trre9g03739 1108 SMART ring_2 790 845 IPR001841 -
Trre9g03739 1108 SMART ring_2 749 788 IPR001841 -
Trre9g03739 1108 MobiDBLite consensus disorder prediction 583 618 - -
Trre9g03739 1108 CDD NAT_SF 940 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03739 Trre-Chr9 45740421 45747382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03739 24 993 PHD Transcription Factor Family AT5G58610 36.253 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre9g03739 Agenet 9.6e-17 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03739 - - gmx:102661511 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03739 9 45740421 45747382 Trre9g03739 9 45740421 45747382 ECH
Trre5g00935 5 6445185 6451574 Trre9g03739 9 45740421 45747382 PCT