Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03727 ATGTGCAGGAAAACTTGTCAAACTGGTTTGATCATGGGGTATGAGAATGGTAATAAAGAAGGGAAGAATCGCGAGATTTCTTCTTTGCTTGAATTTTCAGCTGCAGATGATGTGATTGGTTTCAAAGATGCGGTTGAAAATGACGGCTGTGATGTTGATGAGGTTGGTTTGTGGTATGGAAGGATCGTTTGTTCGAAAAAATTAGGTTATGAAGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGTTTGGATGTGGTGGCTTATATTCTAGGAACAGGCTGTGTTGATGTTAATCGGTCTTGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCTGTTGTTGGCGGTTCTGCTGCTTCCGCAGAGATTATCAAGCTTTTGCTTGATGCATCTGCGGATCCTAGTGTTGTTGATGCTAATGGTAACCGACCTGTTGACTTGATTGTTTCTGGGGCCAATTCTATCTTCAATCCGAGGAAGAGGATGCTGCAAGCTCTTTTGGAGGGTACGGTCGGTGATGCTGATCAGACATGTCTTGCATTTCCGGAGACAATTGACGTTGTTGATGACTATCAAAGGCAAGATATAAACACACCTCGTGTTTCAAAAGATTATCCTGTTGATCTCTCTCTTCCAGACATAAAGAATGAACTATATAGTACCGATGAATTTAGGATGTATACATTCAAAGTTAAGCCTTGCTCAAGGGCGTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGCGATCCGAGGAAATATCATTACAGCTGCGTTCCTTGTCCTGAGTTTCGCAAGGGATCGTGCAGCAAAGGAGATTCTTGTGACTATGCACATGGGATTTTTGAGTGCTGGCTTCATCCTGCTCAGTACCGTACACGTCTTTGCAAGGATGAGAGTTCATGCACGAGAAGAGTTTGCTTCTTTGCTCACAGGATTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGCTCTGCTATTCCATCTCCTAGGTCATATTACAGTACTGCTTCTACATTGGAAATGGGTTCGCTTAACCCAATGTCACTTGGTTCTCCATCGGTTTTGATACCGCCATCCTCAACGCCGCCTTTGACTCCATCTGGAGCATCGTCACCTGTTGCTGCTACAGCCATGTGGCAGACACAGTCTAATGTTTCGGTCCCTAGCCTACAGCTTCCCAAAAGCAGGTTTATGAAGACTGGAATGACCGCTAGAGAAATCGATTTAGATATTGCAATGCTTCGGAATCAACTAATGATGGACGAGATATCCGGTCTTTCCTCACCATCCAACTGGAAAAATTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTTGAATGATGATCATACTACCAGAGAACTAAATAGGTTTTCGGGAATGAAGCCTACTAACCTTGAAGACATTTACGGATCTCTTGATCCATCAATGTTGCACAAATTCCACGGTATCTCACTTGATGGTGCAGGATCTCAGTTACAATCTCCAACTGGAATCCAGATGCGTCCCAATATGAATCAGCAGCTACAAAACTACTCTTCAGGCCATTCCACTTCGAGTAGGATTGGATCGCCACCCTATAATTTTGATTCATCCGGGGAGTTATCCGCAGCGGCTTTAAATTCAAGAGCTGCTGCCTTTTCTAAAAGGAGCCAGAGCTTTATCGAGCGCAGTGTGGCAAACCATCATTCCGAGCATCTTTCTCCTGTGAAGCCTTATGCTTTTCCTAACTGGGGCTCACCCGATGGAAAATTGAATTGGACCGTACAGGGAGAAGAACTGAATAAGCTGAGGAAATCGTCTTCTTTTGGATTTCGAAGCAGCAATACTCCTTTAAATCAAGCTGCAACTAGAGCACAGGAAAATGACAACGAACCAGATGTGTCTTGGGTTAATTCGCTTGTGAAGGACGCTACACCGCAGGAATCTGGTCGGTTTAGTACTGAAGATCAGAAAAGGAAACTGCAATACAATCTTAACAATGGAACCGATGCGATTCCAGCTTGGTTAGAGCAATTGTACATTGATCAGGAACAAACTGTGCATTGA 2082 0.4433 MCRKTCQTGLIMGYENGNKEGKNREISSLLEFSAADDVIGFKDAVENDGCDVDEVGLWYGRIVCSKKLGYEERTPLMVAAMFGSLDVVAYILGTGCVDVNRSCGSDGATALHCAVVGGSAASAEIIKLLLDASADPSVVDANGNRPVDLIVSGANSIFNPRKRMLQALLEGTVGDADQTCLAFPETIDVVDDYQRQDINTPRVSKDYPVDLSLPDIKNELYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDESSCTRRVCFFAHRIEELRPLYASTGSAIPSPRSYYSTASTLEMGSLNPMSLGSPSVLIPPSSTPPLTPSGASSPVAATAMWQTQSNVSVPSLQLPKSRFMKTGMTAREIDLDIAMLRNQLMMDEISGLSSPSNWKNSMPNSPSFPVSLNDDHTTRELNRFSGMKPTNLEDIYGSLDPSMLHKFHGISLDGAGSQLQSPTGIQMRPNMNQQLQNYSSGHSTSSRIGSPPYNFDSSGELSAAALNSRAAAFSKRSQSFIERSVANHHSEHLSPVKPYAFPNWGSPDGKLNWTVQGEELNKLRKSSSFGFRSSNTPLNQAATRAQENDNEPDVSWVNSLVKDATPQESGRFSTEDQKRKLQYNLNNGTDAIPAWLEQLYIDQEQTVH 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03727 693 ProSiteProfiles Ankyrin repeat region circular profile. 106 140 - -
Trre9g03727 693 SUPERFAMILY Ankyrin repeat 49 156 IPR036770 -
Trre9g03727 693 Pfam Ankyrin repeats (3 copies) 67 139 IPR002110 GO:0005515
Trre9g03727 693 ProSiteProfiles Zinc finger C3H1-type profile. 270 292 IPR000571 GO:0046872
Trre9g03727 693 Gene3D - 3 217 IPR036770 -
Trre9g03727 693 ProSiteProfiles Ankyrin repeat profile. 106 141 IPR002110 GO:0005515
Trre9g03727 693 SMART ANK_2a 106 138 IPR002110 GO:0005515
Trre9g03727 693 SMART ANK_2a 71 101 IPR002110 GO:0005515
Trre9g03727 693 MobiDBLite consensus disorder prediction 611 637 - -
Trre9g03727 693 FunFam Zinc finger CCCH domain-containing protein 66 223 291 - -
Trre9g03727 693 PANTHER UNKEMPT FAMILY MEMBER 31 648 IPR045234 -
Trre9g03727 693 SMART c3hfinal6 300 323 IPR000571 GO:0046872
Trre9g03727 693 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Trre9g03727 693 Gene3D - 265 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03727 Trre-Chr9 45662208 45664289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03727 26 688 C2H2 Transcription Factor Family AT5G12850 38.643 6.28e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre9g03727 Ank_2 2.2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03727 - - aprc:113846970 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03727 9 45662208 45664289 Trre9g03727 9 45662208 45664289 ECH