LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03716	ATGATTGTTCGCAAGCAAAACGAAATGATTAGCATTGACATGGTGTTGATTGATGAAGAGTCCAATTATATCCATGCATCACTTCCTAAGAAATTTGCACCCAAATTCAGGAAGAAAAACCTGCAAGAAGGAAAGATATATGTCGTCAAGCAATTTGAGGTGTTAGCCAATAAAAAGAGTTATGCTGTGGTTAAAAACAATTCTTCAATGTTGCAATTCAATGATGATACCACATACAGTGAGGTGGAAGACGATGACAGCATCCTTCTCCATGTTTTTGAGTTTGTTAAATATGCACATTTGGAATCTCGGATAGACAAACATGTGTTGACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGGAAAGGAAAGTTCCTGGTGGTAAAGTGAATATGTTGTCAATTCGGCTGAAAGATATAAGTGGGAACATAATCAATGTCACGTTGTGGGTCATCACATCCACTACATCTAAGAGATATCAGGGTGATTTGTCTCTCAACTCATCAAGTTCAACAAAGATTTATGTCAATATAGACATACCGGAGGCAGCTGAACTCATTCAATCATTCAAGAGTACCAATGTTCTGCATTCATCTGCAAATGCAATTCTCACAAATTCTGCTATCTTGGACAAGACAAGGACTATTTCTGAAATTTTGAGCTCCGCAGTTTCAGGGAGTAATACGGCTGCTGTGTTTAACTGTGTTGCAACAGTGGACGAGATTCTTGATAAAAATGGATGGTATTATGTCTCATGTCCTAAGTGCAAAAAAAGTGCTTCTGCTGCAGAAACCCACTTCAAGTGTGAATTCTGTCATGAAAGTGTGGATTACCCCATTACAAGGTATCGCTTGGAGCTTGGTGTCAAGGACTCTACAAGTTCGACTATATTTGTATTGTTTAATGATGTTGCTGAGCAAGTGGCACAGATGAAATTAGTTGATCTGACCGCAACTTTAGAGAATGAAACTGAGGATGGTTCATCAATACCACATCAACTGAAAAGGATTATTGGGACTATACATATATTTCAAATTAAAATGAAATCTTACTTTGAGGGTCGTGGAAGACAGAGTTTCACAGTGAGTAGGATTGTGAAGCCTAAGGTAGAGAAAGATGACAAGCTTGACAGCGAATGTAATACCTCAAGTAGTTGTCCAAAAATAATGACGCCAAGGTTACCACAAAAGAGAAGAAGGTTACAATATGAAGAGGAGTCTAACGATGCGGAGCAGAAAGAAGTTGCATCGGATTTGGAAGAGTGA	1275	0.382	MIVRKQNEMISIDMVLIDEESNYIHASLPKKFAPKFRKKNLQEGKIYVVKQFEVLANKKSYAVVKNNSSMLQFNDDTTYSEVEDDDSILLHVFEFVKYAHLESRIDKHVLTDIIGVIVDVNPIEERKVPGGKVNMLSIRLKDISGNIINVTLWVITSTTSKRYQGDLSLNSSSSTKIYVNIDIPEAAELIQSFKSTNVLHSSANAILTNSAILDKTRTISEILSSAVSGSNTAAVFNCVATVDEILDKNGWYYVSCPKCKKSASAAETHFKCEFCHESVDYPITRYRLELGVKDSTSSTIFVLFNDVAEQVAQMKLVDLTATLENETEDGSSIPHQLKRIIGTIHIFQIKMKSYFEGRGRQSFTVSRIVKPKVEKDDKLDSECNTSSSCPKIMTPRLPQKRRRLQYEEESNDAEQKEVASDLEE	424

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g03716	424	MobiDBLite	consensus disorder prediction	400	424	-	-
	Trre9g03716	424	Gene3D	-	204	379	IPR012340	-
	Trre9g03716	424	CDD	RPA1_DBD_C	219	378	IPR047192	-
	Trre9g03716	424	CDD	RPA1_DBD_A_like	3	78	-	-
	Trre9g03716	424	MobiDBLite	consensus disorder prediction	376	424	-	-
	Trre9g03716	424	SUPERFAMILY	Nucleic acid-binding proteins	3	87	IPR012340	-
	Trre9g03716	424	Gene3D	-	2	81	IPR012340	-
	Trre9g03716	424	SUPERFAMILY	Nucleic acid-binding proteins	93	195	IPR012340	-
	Trre9g03716	424	SUPERFAMILY	Nucleic acid-binding proteins	216	372	IPR012340	-
	Trre9g03716	424	PANTHER	OS03G0429900 PROTEIN	6	396	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03716	Trre-Chr9	45565391	45567766	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03716	4	385	Core DNA Replication Machinery Family	AT4G19130	23.188	5.65e-20	90.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03716	-		-	mtr:120580096	414.075

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