Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03715 ATGATTGTTCGCAAGCAAAACGAAATGATTAGCATTGACATGGTGTTGATTGATGAAGAGTCCAATTATATCCATGCATCACTTCCTAAGAAATTTGCACCCAAATTCAGGAAGAAAAACCTGCAAGAAGGAAAGATATATGTCGTCAAGCAATTTGAGGTGTTAGCCAATAAAAAGAGTTATGCTGTGGTTAAAAACAATTCTTCAATGTTGCAATTCAATGATGATACCACATACAGTGAGGTGGAAGACGATGACAGCATCCTTCTCCATGTTTTTGAGTTTGTTAAATATGCACATTTGGAATCTCGGATAGACAAACATGTGTTGACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGGAAAGGAAAGTTCCTGGTGGTAAAGTGAATATGTTGTCAATTCGGCTGAAAGATATAAGTGGGAACATAATCAATGTCACGTTGTGGGTCATCACATCCACTACATCTAAGAGATATCAGGGTGATTTGTCTCTCAACTCATCAAGTTCAACAAAGATTTATGTCAATATAGACATACCGGAGGCAGCTGAACTCATTCAATCATTCAAGAGTACCAATGTTCTGCATTCATCTGCAAATGCAATTCTCACAAATTCTGCTATCTTGGACAAGACAAGGACTATTTCTGAAATTTTGAGCTCCGCAGTTTCAGGGAGTAATACGGCTGCTGTGTTTAACTGTGTTGCAACAGTGGACGAGATTCTTGATAAAAATGGATGGTATTATGTCTCATGTCCTAAGTGCAAAAAAAGTGCTTCTGCTGCAGAAACCCACTTCAAGTGTGAATTCTGTCATGAAAGTGTGGATTACCCCATTACAAGGTATCGCTTGGAGCTTGGTGTCAAGGACTCTACAAGTTCGACTATATTTGTATTGTTTAATGATGTTGCTGAGCAAGTGGCACAGATGAAATTAGTTGATCTGACCGCAACTTTAGAGAATGAAACTGAGGATGGTTCATCAATACCACATCAACTGAAAAGGATTATTGGGACTATACATATATTTCAAATTAAAATGAAATCTTACTTTGAGGGTCGTGGAAGACAGAGTTTCACAGTGAGTAGGATTGTGAAGCCTAAGGTAGAGAAAGATGACAAGCTTGACAGCGAATGTAATACCTCAAGTAGTTGTCCAAAAATAATGACGCCAAGGTTACCACAAAAGAGAAGAAGGTTAAGGTTACAATATGAAGAGGAGTCTAACGATGCGGAGCAGAAAGAAGTTGCATCGGATTTGGAAGAGTGA 1281 0.3817 MIVRKQNEMISIDMVLIDEESNYIHASLPKKFAPKFRKKNLQEGKIYVVKQFEVLANKKSYAVVKNNSSMLQFNDDTTYSEVEDDDSILLHVFEFVKYAHLESRIDKHVLTDIIGVIVDVNPIEERKVPGGKVNMLSIRLKDISGNIINVTLWVITSTTSKRYQGDLSLNSSSSTKIYVNIDIPEAAELIQSFKSTNVLHSSANAILTNSAILDKTRTISEILSSAVSGSNTAAVFNCVATVDEILDKNGWYYVSCPKCKKSASAAETHFKCEFCHESVDYPITRYRLELGVKDSTSSTIFVLFNDVAEQVAQMKLVDLTATLENETEDGSSIPHQLKRIIGTIHIFQIKMKSYFEGRGRQSFTVSRIVKPKVEKDDKLDSECNTSSSCPKIMTPRLPQKRRRLRLQYEEESNDAEQKEVASDLEE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03715 426 SUPERFAMILY Nucleic acid-binding proteins 3 87 IPR012340 -
Trre9g03715 426 CDD RPA1_DBD_C 219 378 IPR047192 -
Trre9g03715 426 CDD RPA1_DBD_A_like 3 78 - -
Trre9g03715 426 Gene3D - 155 201 IPR012340 -
Trre9g03715 426 Gene3D - 87 154 IPR012340 -
Trre9g03715 426 PANTHER OS03G0429900 PROTEIN 6 396 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g03715 426 Gene3D - 204 380 IPR012340 -
Trre9g03715 426 MobiDBLite consensus disorder prediction 402 426 - -
Trre9g03715 426 SUPERFAMILY Nucleic acid-binding proteins 93 195 IPR012340 -
Trre9g03715 426 Coils Coil 401 421 - -
Trre9g03715 426 MobiDBLite consensus disorder prediction 376 426 - -
Trre9g03715 426 SUPERFAMILY Nucleic acid-binding proteins 216 372 IPR012340 -
Trre9g03715 426 CDD RPA1_DBD_B_like 112 194 - -
Trre9g03715 426 Pfam Replication factor-A C terminal domain 236 376 IPR013955 -
Trre9g03715 426 Gene3D - 2 81 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03715 Trre-Chr9 45565391 45567766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03715 4 385 Core DNA Replication Machinery Family AT4G19130 23.188 5.00e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03715 - - mtr:120580096 410.223