Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03689 ATGTCGCACTTCGGAAGACAAGGACCTCCAGACATCGCTGACACCTACTCTCTCCTCGTTCTCAACATCACTTTCCGTACAACCGCTGATGACCTATTTCCTCTGTTTGATAAATACGGCAAAGTTGTTGACATTTTCATCCCCAAAGATCGAAGGACCGGTGAATCGAGGGGTTTCGCTTTTGTGCGTTACAAGTATGCTGATGAAGCTTCAAAGGCTGTTGATAGACTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGAGAATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCACGATGATTACAGAGACAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGTATGGACGTGATAGGTACCGTGGTGGGCGAGATAGGGACCATCGCCGCCGAAGCAGAAGCCGAAGTGCCAGTCCTGATTACAAGCGCCGTGGAAGGGGGCGCTATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGCAGACAGCCGCTCCCCTGCACGACACAGTCCTAGTCCTGGAAGGAGCCCTTCTCCTAAGAAGAGTATTTCTCCCCAAAGGAGTACTTCTCCCAGGAAAAGTCCTCGCCGTGAAAGTCCTGTTAATCGTAGCCGTGATGGAAGGTCTCCTACTCCTCACAGTGTCTCACCACGAGGTCGCCCTGATGCATCCCGAAGCCCATCTCCTCGAAATTCAAACGGTGATGCGCATGTTGACATTGTGGCTGTTGATGCTGTGTCTATGTCATTGATGATTGTTCGCGAGTTTGGTGCTGGTTCCAAACTGTTTTTTACCAGTGTGCCGGTTAGAAAGATGCTTAGTTGA 924 0.4957 MSHFGRQGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKSSRSRSPSRRRHHDDYRDKDYRRRSRSRSYDRYGRDRYRGGRDRDHRRRSRSRSASPDYKRRGRGRYDDERHSRSRSRSADSRSPARHSPSPGRSPSPKKSISPQRSTSPRKSPRRESPVNRSRDGRSPTPHSVSPRGRPDASRSPSPRNSNGDAHVDIVAVDAVSMSLMIVREFGAGSKLFFTSVPVRKMLS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03689 307 MobiDBLite consensus disorder prediction 122 157 - -
Trre9g03689 307 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Trre9g03689 307 MobiDBLite consensus disorder prediction 198 223 - -
Trre9g03689 307 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Trre9g03689 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Trre9g03689 307 SMART rrm1_1 17 90 IPR000504 GO:0003723
Trre9g03689 307 Gene3D - 4 105 IPR012677 -
Trre9g03689 307 MobiDBLite consensus disorder prediction 164 197 - -
Trre9g03689 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Trre9g03689 307 CDD RRM_SRSF2_SRSF8 18 90 - -
Trre9g03689 307 MobiDBLite consensus disorder prediction 100 270 - -
Trre9g03689 307 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03689 Trre-Chr9 45288470 45292006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03689 17 89 Eukaryotic Initiation Factors Gene Family AT4G34110 39.726 3.98e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03689 K12891 - gmx:100778928 317.005