Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03688 ATGCAGCCTCGCCGGAGAAGGTGTGTCCGGCCATCGGCGGTGCAGGAGAAGGAATCGAAACATTTTATGAAAGCTATACTTCCTTCACCCATTCATGCTAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCAGATGGTTGTGTATGGAAAATGGAATTGATGAAATGGAATTCAAAGTTTGGTGTCATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCCAAGTACTAATGAAGAACCAAACACAAAGTATCATAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAGAGTTGTGGGAAAAAGGCCAAAAGCATATCTAAAGATGCTTCTAAAAGAGCTAAGGATGCTGCCAATGAATTTAACCCAAATAATCCTTATTTTTGTTCCAAAGTTGCTATCAGAAAATATGTGTATGTTCCTTCTGATTTTGCTAGAAATTATTTGAAGCCAAATGTTCCTATAAAGCTCCAAAACACTAATGGAAAGCAATGGAATGTTTTTCCCAATTTGCATGAAGCCGGATTATCAGGAATGAATATATCAAAGGGATTTTCTAAATTTCATAGGGACAACAACCTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAACAACCCGGTTGTGCTAAAAGTCACGATGAGAGTTTCTTTGTCAATGCAGCCTCGCTGGAGAAGGTTTGTCCGGCCATCGGAGGTGCCGGAGAAGGAATCGAAACATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCTAAAGAAATAAGAATTCCAGACGAATTTATAACAAAATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCAGATGGTTGTGTATGGGAAATGGAATTGAAGAAATGTGACGAGAACGTTTTCTTTTGCAACAGATGGCAAGAGTTTGTTGAATACTATTCTATAGGATATGGTTGCTATCTGTCTTTCAAGTATGAAGGTAATTCCAAGTTTAGTGTTATAATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCCAAGTACTAATGAAGAACCAAACACAAAGTATCATAGTCCAAGGAAAAGGTCTAAGGTTGAAACAAGTGAGATTTGTGGGAAAAAGGCCAAAAGCATGTCTAAAGATGCTTCTAAAAGAGCTAAGGATGCTGCCAATGAATTCAACCCAAATAATCCTTATTTTTGTTCCAGAATTGCTATCAGAAAATATGTGTATGTTCCTTCTGATTTTTCTCGGAAGTATTTGAAGTTAAATGTTCCTATAAAGCTCCAAAACTCTCATGGAGAGCAATGGAATGTTTTTTGCAAATTGCATGAAGCCGGATTATCAGGAATGAATATATCAAAGGGATTTTCTAAATTTCAAAGGGACAGCAACCTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTTACGATGTTTCGCGCAGTTGACTATCGCAATTAA 1551 0.3688 MQPRRRRCVRPSAVQEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATITVPDGCVWKMELMKWNSKFGVIIFDATSVEICYPFKTPSTNEEPNTKYHSPRKRSKVETSESCGKKAKSISKDASKRAKDAANEFNPNNPYFCSKVAIRKYVYVPSDFARNYLKPNVPIKLQNTNGKQWNVFPNLHEAGLSGMNISKGFSKFHRDNNLSHGDYCVFELIKNNPVVLKVTMRVSLSMQPRWRRFVRPSEVPEKESKHFMKAILPSPIHAKEIRIPDEFITKFGNELKNVATITVPDGCVWEMELKKCDENVFFCNRWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTPSTNEEPNTKYHSPRKRSKVETSEICGKKAKSMSKDASKRAKDAANEFNPNNPYFCSRIAIRKYVYVPSDFSRKYLKLNVPIKLQNSHGEQWNVFCKLHEAGLSGMNISKGFSKFQRDSNLSHGDYCVFELIKKKPVVLKVTMFRAVDYRN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03688 516 Pfam B3 DNA binding domain 263 354 IPR003340 GO:0003677
Trre9g03688 516 Pfam B3 DNA binding domain 156 235 IPR003340 GO:0003677
Trre9g03688 516 Pfam B3 DNA binding domain 430 511 IPR003340 GO:0003677
Trre9g03688 516 SUPERFAMILY DNA-binding pseudobarrel domain 18 75 IPR015300 -
Trre9g03688 516 SUPERFAMILY DNA-binding pseudobarrel domain 259 354 IPR015300 -
Trre9g03688 516 Gene3D - 398 515 IPR015300 -
Trre9g03688 516 Gene3D - 125 239 IPR015300 -
Trre9g03688 516 PANTHER B3 DOMAIN-CONTAINING 73 228 - -
Trre9g03688 516 MobiDBLite consensus disorder prediction 102 136 - -
Trre9g03688 516 CDD B3_DNA 422 510 IPR003340 GO:0003677
Trre9g03688 516 Gene3D - 12 82 IPR015300 -
Trre9g03688 516 Gene3D - 253 356 IPR015300 -
Trre9g03688 516 SUPERFAMILY DNA-binding pseudobarrel domain 141 232 IPR015300 -
Trre9g03688 516 SMART B3_2 421 512 IPR003340 GO:0003677
Trre9g03688 516 SMART B3_2 149 238 IPR003340 GO:0003677
Trre9g03688 516 SMART B3_2 263 355 IPR003340 GO:0003677
Trre9g03688 516 CDD B3_DNA 150 237 IPR003340 GO:0003677
Trre9g03688 516 ProSiteProfiles B3 DNA-binding domain profile. 262 355 IPR003340 GO:0003677
Trre9g03688 516 ProSiteProfiles B3 DNA-binding domain profile. 415 512 IPR003340 GO:0003677
Trre9g03688 516 SUPERFAMILY DNA-binding pseudobarrel domain 413 510 IPR015300 -
Trre9g03688 516 CDD B3_DNA 261 353 IPR003340 GO:0003677
Trre9g03688 516 ProSiteProfiles B3 DNA-binding domain profile. 143 238 IPR003340 GO:0003677
Trre9g03688 516 MobiDBLite consensus disorder prediction 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03688 Trre-Chr9 45281618 45285448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03688 22 74 B3 DNA Binding Superfamily AT3G18990 43.396 1.75e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g03688 B3 9.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03688 - - mtr:11408476 575.474