Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03687 ATGCAGCCTCACCGTGGAAGGTGTGTCCGGCCATCGGCGGTGCCGGAGAAGGAACCAAAGCATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCTAAACAAATTAGAATTCCAGACGAATTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACTATCATTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAGTACGATGAACATGTTTTCTTTTGCAACAAATGGCAAGAGTTTGTTGAATACTATTCTATAGGATATGGTTACTATCTGACTTTCAAATATGAGGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGTTATCCTTTCAAAACTCCAATTACCGATGGAGTAGAACCAAACACAAAGTATGATAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAGTGTCGTGGGAAAAAGGTCGAAAGCATGTCCAAGTCTAAAGATGCTTCAAAAAGTGCAAAGGATGCTGCCAATGAATTCAACCCAAACAATCCTTATTTTCGTTCCAAAATCAGTTGTAGTGGACACGTGAATGTTCCTTTTGCTTTTGCTCCGAAGTATCTGAAGCCAAATGTTCCAATAAAGCTCCAAAATTCTAATGGAGAGCAATGGGAAGTATTTTGCAGATTGTATGAGGCCAAATGGTACAATATGCAAATATCAAAGGGATTTTCTAAATTTCAAAGGGACAACAACCTGTCACATGGAGATTATTGTGTGTTTGAGCTGACCAAGAAGAACCCGGTTGTGCTAAAAGTCACGATGTTTCGTGCAGTTGACTATCGCGATTAA 837 0.3871 MQPHRGRCVRPSAVPEKEPKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIIVPDGCVWEMELKKYDEHVFFCNKWQEFVEYYSIGYGYYLTFKYEGNSKFSVIIFDATSVEICYPFKTPITDGVEPNTKYDSPRKRSKVETSECRGKKVESMSKSKDASKSAKDAANEFNPNNPYFRSKISCSGHVNVPFAFAPKYLKPNVPIKLQNSNGEQWEVFCRLYEAKWYNMQISKGFSKFQRDNNLSHGDYCVFELTKKNPVVLKVTMFRAVDYRD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03687 278 Pfam B3 DNA binding domain 190 273 IPR003340 GO:0003677
Trre9g03687 278 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Trre9g03687 278 SMART B3_2 181 274 IPR003340 GO:0003677
Trre9g03687 278 SMART B3_2 22 114 IPR003340 GO:0003677
Trre9g03687 278 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Trre9g03687 278 ProSiteProfiles B3 DNA-binding domain profile. 209 274 IPR003340 GO:0003677
Trre9g03687 278 MobiDBLite consensus disorder prediction 134 169 - -
Trre9g03687 278 CDD B3_DNA 20 112 IPR003340 GO:0003677
Trre9g03687 278 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Trre9g03687 278 SUPERFAMILY DNA-binding pseudobarrel domain 175 272 IPR015300 -
Trre9g03687 278 Gene3D - 160 277 IPR015300 -
Trre9g03687 278 MobiDBLite consensus disorder prediction 131 171 - -
Trre9g03687 278 CDD B3_DNA 183 272 IPR003340 GO:0003677
Trre9g03687 278 PANTHER B3 DOMAIN-CONTAINING 16 262 - -
Trre9g03687 278 Gene3D - 13 115 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03687 Trre-Chr9 45277921 45279961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03687 137 275 B3 DNA Binding Superfamily AT3G18990 38.356 1.03e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g03687 B3 7.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03687 - - mtr:120575755 393.275