Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03686 ATGCAGCCTCGCCAGCCATCTGAGTTGCCTGAGAAGGAATCGAAACATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCTAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATCGTTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAATGCGATGAATGTACTAATGAAGAACCAAACACAAAGTATGATAGTCCTAGGAAAAGGTCCAAGGTTGAAACTAGTGAAAGTTGTGGGAAAAAGACCGAAAGCATGTCTAAAGATGCTTCTAAAAGAGCTAAGGATGCTGCCAATGAATTCAACCCAAATAATCCTCATTTTTGTTCCAAAATTGTTATAAGAAGATTTGTGCATGTTCAGGGTGATTTTGCTCGAAAGTATTTAAAGCCAAATGTTCATATAAAGCTCCAAAATTCTTATGGAGAACAATGGGAAGTTTATTGCATATTGCATGGTGCCAGATGGTACAATATGGAAATATCAAAGGGATTTTCTAAATTTCAAGGGGACAACAACCTGTCACATGGTGATTATTGTGTGTTTGAGCTGATCAAGAACAACCTGGTTGTGCTAAAAGTCACAATGTTTCGTGCAGTTGACTATCGCGATTAA 657 0.3744 MQPRQPSELPEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIVVPDGCVWEMELKKCDECTNEEPNTKYDSPRKRSKVETSESCGKKTESMSKDASKRAKDAANEFNPNNPHFCSKIVIRRFVHVQGDFARKYLKPNVHIKLQNSYGEQWEVYCILHGARWYNMEISKGFSKFQGDNNLSHGDYCVFELIKNNLVVLKVTMFRAVDYRD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03686 218 MobiDBLite consensus disorder prediction 70 110 - -
Trre9g03686 218 SUPERFAMILY DNA-binding pseudobarrel domain 12 68 IPR015300 -
Trre9g03686 218 SUPERFAMILY DNA-binding pseudobarrel domain 115 212 IPR015300 -
Trre9g03686 218 MobiDBLite consensus disorder prediction 70 113 - -
Trre9g03686 218 PANTHER B3 DOMAIN-CONTAINING 75 202 - -
Trre9g03686 218 SMART B3_2 123 214 IPR003340 GO:0003677
Trre9g03686 218 CDD B3_DNA 138 212 IPR003340 GO:0003677
Trre9g03686 218 Gene3D - 8 75 IPR015300 -
Trre9g03686 218 Gene3D - 100 217 IPR015300 -
Trre9g03686 218 ProSiteProfiles B3 DNA-binding domain profile. 149 214 IPR003340 GO:0003677
Trre9g03686 218 Pfam B3 DNA binding domain 135 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03686 Trre-Chr9 45270780 45275175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03686 79 216 REM Transcription Factor Family AT1G49480 36.735 4.68e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g03686 B3 2.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03686 - - mtr:120575755 271.166