Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03685 ATGCAGCCTCGCCAGCCAGGGTGTTTCCGGTCATCGGCGGTGGCGGAGAAGGAATCAAAACATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCTAAACAAATTAGAATTCCAGACGAATTTATTACAAGATTTGGGAATGAACTCGAAAATGTTGCTACAATAATTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAATGCGACGAACATGTTTTCTTTTGCAACAGATGGCAAGAGTTTGTTGAATACTATTCTATTGGATATGGTTGTTATCTATCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCCAATTACTAATGGAGCAGAACCAAACACAAAGTATCAAAATCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAGAGTCGTGGGAAAAAGGTCAAAAGCGTGTCTAAAGATGCTTCAAAAAGTGCAAAGGATGCTGCCAATGAATTCAACCCAAACAATCCTTACTTTCGTATAAAAATCACTGTGAGAAAACATGGGTATGTTCCTTCTGATTTTGCTCGAAAGTATTTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTTATGGAGAACATTGGGAAGTTTATTGCACATTGCTGCATTGTATGGAAATATCAAAGGGATTTTCTAAATTTCAAAGGGACAACAACCTTTCTCATGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGTTAAAAGTCACAATGTTTCGCACAGTTGACTATCGCGATTAA 819 0.3712 MQPRQPGCFRSSAVAEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELENVATIIVPDGCVWEMELKKCDEHVFFCNRWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTPITNGAEPNTKYQNPRKRSKVETSESRGKKVKSVSKDASKSAKDAANEFNPNNPYFRIKITVRKHGYVPSDFARKYLKPNVPIKLQNSYGEHWEVYCTLLHCMEISKGFSKFQRDNNLSHGDYCVFELIKKKPVVLKVTMFRTVDYRD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03685 272 SUPERFAMILY DNA-binding pseudobarrel domain 18 113 IPR015300 -
Trre9g03685 272 CDD B3_DNA 191 266 IPR003340 GO:0003677
Trre9g03685 272 Gene3D - 157 271 IPR015300 -
Trre9g03685 272 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Trre9g03685 272 SUPERFAMILY DNA-binding pseudobarrel domain 174 266 IPR015300 -
Trre9g03685 272 CDD B3_DNA 20 112 IPR003340 GO:0003677
Trre9g03685 272 Pfam B3 DNA binding domain 186 267 IPR003340 GO:0003677
Trre9g03685 272 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Trre9g03685 272 Gene3D - 12 115 IPR015300 -
Trre9g03685 272 SMART B3_2 22 114 IPR003340 GO:0003677
Trre9g03685 272 SMART B3_2 180 268 IPR003340 GO:0003677
Trre9g03685 272 MobiDBLite consensus disorder prediction 137 167 - -
Trre9g03685 272 ProSiteProfiles B3 DNA-binding domain profile. 192 268 IPR003340 GO:0003677
Trre9g03685 272 PANTHER B3 DOMAIN-CONTAINING 16 259 - -
Trre9g03685 272 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03685 Trre-Chr9 45266546 45268317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03685 138 269 B3 DNA Binding Superfamily AT3G18990 38.129 7.06e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g03685 B3 5.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03685 - - mtr:120575755 385.956