Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03684 ATGCAGCCTCGCCAGCCAGGGTGTTTCCGGTCATCGGCGGTGGCGGAGAAGGAATCAAAACATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCTAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAAAAATGTTGCTACAATCGTTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAATGCGATGAACATGTTTTCTTTTGCAACAGTTGGCAAGAGTTCGTTGAATACTATTCTATAGGATATGGTTGCTACTTGTCTTTCAAATATGAAGGGAATTCGAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCCAAGTCCTAATGAAGAACCAAACACAAAGTATCAAAATCCTAGGAAAAGATCCAAGGTTGAAACAAGTGAGAGTTGTGGGAAAAAGGCCAAAAGCATGTCTAAAGATACTTCAAAAAGTGCAAAGGATGCTGCCAATGAATTCAAATCAAACAATCCTTACTTTCGTATAAAAATCACTATGAGAAAACATGGGTATGTTCCTACTGATTTTGCTCAAAAGTATTTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTTATGGAGAACAATGGGAAGTTTATTGCATATCGCATGGTGCCAGATGGTACAATATGGAAATATCAAAGGGATTTTTAATATTTCTAAGGGACAGCAACCTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTCACGATGTTTCGCGCAGTTGAAATTTGCTATCCTTTGAAAACTCCAATTACTAATGGAGCAGAACCAAACACAAAGTATCAAAATCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAGAGTCGTGGGAAAAAGGTCAAAAGCGTGTCTAAAGATGCTTCAAAAAGTGCAAAGGATTCTGCCCATGAATTCAACCCAAACAATCCTTACTTTCGTATAAAAATCACTATGAGAAAACAGGGGCGTGTTCCTTCTGATTTTTGTCGAAAGTATCTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTAATGGAGAAGAATGGGAAGTTTATTGCTTATTGCATATTGCCAAATGGTACAATATGGATATATCGAAGGGATTTTCTAAATTTCAAAGAGACAACAAACTATCAAATGGAGATTACTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTCACCATATTTCGCGCAGTTGACTATCGCAATTAA 1296 0.3719 MQPRQPGCFRSSAVAEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIVVPDGCVWEMELKKCDEHVFFCNSWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTPSPNEEPNTKYQNPRKRSKVETSESCGKKAKSMSKDTSKSAKDAANEFKSNNPYFRIKITMRKHGYVPTDFAQKYLKPNVPIKLQNSYGEQWEVYCISHGARWYNMEISKGFLIFLRDSNLSHGDYCVFELIKKKPVVLKVTMFRAVEICYPLKTPITNGAEPNTKYQNPRKRSKVETSESRGKKVKSVSKDASKSAKDSAHEFNPNNPYFRIKITMRKQGRVPSDFCRKYLKPNVPIKLQNSNGEEWEVYCLLHIAKWYNMDISKGFSKFQRDNKLSNGDYCVFELIKKKPVVLKVTIFRAVDYRN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03684 431 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Trre9g03684 431 CDD B3_DNA 190 269 IPR003340 GO:0003677
Trre9g03684 431 Gene3D - 157 273 IPR015300 -
Trre9g03684 431 Gene3D - 312 430 IPR015300 -
Trre9g03684 431 SUPERFAMILY DNA-binding pseudobarrel domain 172 269 IPR015300 -
Trre9g03684 431 Gene3D - 12 115 IPR015300 -
Trre9g03684 431 CDD B3_DNA 20 112 IPR003340 GO:0003677
Trre9g03684 431 MobiDBLite consensus disorder prediction 292 323 - -
Trre9g03684 431 SUPERFAMILY DNA-binding pseudobarrel domain 328 425 IPR015300 -
Trre9g03684 431 MobiDBLite consensus disorder prediction 285 329 - -
Trre9g03684 431 SMART B3_2 179 271 IPR003340 GO:0003677
Trre9g03684 431 SMART B3_2 22 114 IPR003340 GO:0003677
Trre9g03684 431 SMART B3_2 334 427 IPR003340 GO:0003677
Trre9g03684 431 MobiDBLite consensus disorder prediction 126 168 - -
Trre9g03684 431 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Trre9g03684 431 Pfam B3 DNA binding domain 344 426 IPR003340 GO:0003677
Trre9g03684 431 Pfam B3 DNA binding domain 186 270 IPR003340 GO:0003677
Trre9g03684 431 PANTHER B3 DOMAIN-CONTAINING 263 418 - -
Trre9g03684 431 SUPERFAMILY DNA-binding pseudobarrel domain 18 113 IPR015300 -
Trre9g03684 431 CDD B3_DNA 346 425 IPR003340 GO:0003677
Trre9g03684 431 ProSiteProfiles B3 DNA-binding domain profile. 347 427 IPR003340 GO:0003677
Trre9g03684 431 MobiDBLite consensus disorder prediction 134 167 - -
Trre9g03684 431 ProSiteProfiles B3 DNA-binding domain profile. 174 271 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03684 Trre-Chr9 45261169 45264708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03684 292 428 B3 DNA Binding Superfamily AT3G18990 34.965 2.63e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g03684 B3 1.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03684 - - mtr:120575755 402.905