Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03683 ATGTTCCAAGTCACTAGAACCATAGCTCTACACTCATCTTCACTCTGCAAAATCTCTTCAGAAAAACCATCATCACCAACAAATTTAACTCCCAAACCCAAAAGTCTCCTCCAAAACAACCCACTTTACACACCAACTCATGAAAAACTTTCCCTTCAATTCAAAGAAAAAATCCTATGTCTTGAAGTTATGGGTATTGATTCAGGTATTCAACATAAAGACCTTCCAAGAATCTTTGGTATGTGTCCTACAATTCTCACTTCAGATATCAAAACTGATCTTAACCCAGTTTTTGATTTTCTTGTACAAGAGCTTAATGTACCTGAACATAACTTTAGAAGAGTTATAAAAAAATGTCCAAGATTTCTTACTTCTAGTGTTAAGGATCAGCTTAAACCAGCTTTATTTTATCTTAATAGATTAGGGTTAAGGGATTTAGAAGCTTTAGCTTATCAAGATTGTGTTTTATTAGTTTCAAATGTTGAAAAAACACTTATTCCTAAACTTAAGCATTTGGAAAGTATGGGATTTTCTAAAGAAGAGGTTAGATGTATGGTGTTAAGAAGTCCTGCATTGTTGACTTTTAGTATTGAGAATAATTTTCAGCCAAAATTTGAGTATTTTTCTGTTGATATGAAGAGGAAATTGGAAGAGTTGAAAGAGTTTCCTCAGTATTTTTCTTTTAGTTTGGAGAATAGGATAAAGGTTAGACATATGGAGATTGTTAAAAGTAGGATAAGTTTGCCTTTGTCATTGATGCTTAAAACTACTGATGATGAATTTAGGGAGTTGTTAAGTAGGGGGAATAAGTGA 813 0.326 MFQVTRTIALHSSSLCKISSEKPSSPTNLTPKPKSLLQNNPLYTPTHEKLSLQFKEKILCLEVMGIDSGIQHKDLPRIFGMCPTILTSDIKTDLNPVFDFLVQELNVPEHNFRRVIKKCPRFLTSSVKDQLKPALFYLNRLGLRDLEALAYQDCVLLVSNVEKTLIPKLKHLESMGFSKEEVRCMVLRSPALLTFSIENNFQPKFEYFSVDMKRKLEELKEFPQYFSFSLENRIKVRHMEIVKSRISLPLSLMLKTTDDEFRELLSRGNK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03683 270 Gene3D Transcription termination factor 3, mitochondrial 37 267 IPR038538 -
Trre9g03683 270 Pfam mTERF 156 261 IPR003690 GO:0003690|GO:0006355
Trre9g03683 270 Pfam mTERF 52 145 IPR003690 GO:0003690|GO:0006355
Trre9g03683 270 PANTHER CGI-12 PROTEIN-RELATED 66 263 IPR003690 GO:0003690|GO:0006355
Trre9g03683 270 MobiDBLite consensus disorder prediction 18 40 - -
Trre9g03683 270 FunFam Transcription termination factor MTEF1, chloroplastic 101 269 - -
Trre9g03683 270 SMART mt_12 216 249 IPR003690 GO:0003690|GO:0006355
Trre9g03683 270 SMART mt_12 76 108 IPR003690 GO:0003690|GO:0006355
Trre9g03683 270 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Trre9g03683 270 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Trre9g03683 270 SMART mt_12 183 215 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03683 Trre-Chr9 45257941 45258837 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre9g03683 mTERF 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03683 K15032 - gmx:100788221 385.956