Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03679 ATGAATGAAGATATGGAGAATAATAATGTAGTGACACAACAAAACATTTCATCATCAAGTTCTTCAATGGTGAGAAAGAAATCAGATATAGTTTTGGTGACAAATAATAATGTTAGGTTTCAAATATTAAGAAATGTGATGACAAATATGAAAGAAGTGATGTTGGGTACTAAGCTTCTTGTGCTTTTTCCGGCTGTTCCTTTAGCTGTTGCTGCTGATTTTTATAGCTTTGGAAGGCCTTGGATTTTTGCTTTGAGCTTGCTTGGACTTGCTCCCCTAGCTGAACGTGTCAGCTTCCTCACTGAGCAAATTGCATATTTCACCGGCCCAACAGTTGGAGGGCTTCTAAATGCAACTTGTGGCAATGCAACTGAAATGATAATAGCAATATTAGCACTTCATCAGAACAAAATACATGTTGTGAAGTTCTCCCTGCTTGGTTCCATTCTCTCAAACCTTCTATTGGTTCTAGGCAGCTCACTCCTTTGTGGTGGCTTAGCAAACCTTAAGAGGGAGCAAAGATATGATAGAAAACAAGCAGATGTAAACTCATTGCTTTTGTTGTTGGGATTGCTATGCCATTTGTTGCCTTTAATGTTCAAATATGCTTTGGCTGGGGGAAATCATTCAATTGCCAGTTGTACTCTTCAATTGTCAAGAGCAAGCAGTGTTGTTATGCTTCTAGCATATGTTGCATATATCTTCTTCCAATTGAAAACTCATCGAAAAATATTTGATGCACAAGAGGTGGAAGATGAAGATGATGAAAAAGCAGTGATAGGATTTTGGAGTGCATTCAGTTGGTTGGTGGGTATGACATTGGTCATATCTGTGCTTTCTGAATATGTTGTGGGAACCATTGAGTCTGCTTCAGAATCTTGGGGAATTTCTGTTAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGGAATGCTGCTGAACATGCTGGTTCAATCATATTTGCTTACAAGAACAAATTGGACATATCTTTAGGTGTTGCTATGGGATCTGCTACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGATTGTTGCATGGATAATGGGTATAAGAATGGATTTGGACTTTAACCTTCTTGAAACTGGATGTCTTGGCTTTGCAATTATTGTTACAGCCTTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGATCCTTACTCTCTGTTACATTGTTATTTCTGCATGTTTTTTTGTTCTCAAATCTCCACAAATCAATCAATATGGTATCGCCACGCTTTGA 1272 0.3781 MNEDMENNNVVTQQNISSSSSSMVRKKSDIVLVTNNNVRFQILRNVMTNMKEVMLGTKLLVLFPAVPLAVAADFYSFGRPWIFALSLLGLAPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIIAILALHQNKIHVVKFSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLLLLLGLLCHLLPLMFKYALAGGNHSIASCTLQLSRASSVVMLLAYVAYIFFQLKTHRKIFDAQEVEDEDDEKAVIGFWSAFSWLVGMTLVISVLSEYVVGTIESASESWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVIVAWIMGIRMDLDFNLLETGCLGFAIIVTAFTLQDGTSHYMKGVILTLCYIVISACFFVLKSPQINQYGIATL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03679 423 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g03679 423 FunFam Vacuolar cation/proton exchanger 110 254 - -
Trre9g03679 423 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 13 413 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre9g03679 423 NCBIfam calcium/proton exchanger 64 408 IPR004798 GO:0006816|GO:0015369
Trre9g03679 423 Gene3D - 110 253 IPR044880 -
Trre9g03679 423 Gene3D - 256 408 IPR044880 -
Trre9g03679 423 FunFam Vacuolar cation/proton exchanger 255 409 - -
Trre9g03679 423 Pfam Sodium/calcium exchanger protein 265 405 IPR004837 GO:0016020|GO:0055085
Trre9g03679 423 Pfam Sodium/calcium exchanger protein 81 238 IPR004837 GO:0016020|GO:0055085
Trre9g03679 423 NCBIfam calcium/proton exchanger 45 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03679 Trre-Chr9 45214375 45219176 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03679 12 414 Antiporters AT2G38170 66.910 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03679 K07300 - gmx:100816844 656.751