Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03678 ATGAGCTTCTTTTCAGATTCTACATCAAGACCATTTCGAACAATGAATGAAGATATGGAGAATAATAATGTAGTGACACAACAAAACATTTCATCATCAAGTTCTTCAATGGTGAGAAAGAAATCAGATATAGTTTTGGTGACAAATAATAATGTTAGGTTTCAAATATTAAGAAATGTGATGACAAATATGAAAGAAGTGATGTTGGGTACTAAGCTTCTTGTGCTTTTTCCGGCTGTTCCTTTAGCTGTTGCTGCTGATTTTTATAGCTTTGGAAGGCCTTGGATTTTTGCTTTGAGCTTGCTTGGACTTGCTCCCCTAGCTGAACGTGTCAGCTTCCTCACTGAGCAAATTGCATATTTCACCGGCCCAACAGTTGGAGGGCTTCTAAATGCAACTTGTGGCAATGCAACTGAAATGATAATAGCAATATTAGCACTTCATCAGAACAAAATACATGTTGTGAAGTTCTCCCTGCTTGGTTCCATTCTCTCAAACCTTCTATTGGTTCTAGGCAGCTCACTCCTTTGTGGTGGCTTAGCAAACCTTAAGAGGGAGCAAAGATATGATAGAAAACAAGCAGATGTAAACTCATTGCTTTTGTTGTTGGGATTGCTATGCCATTTGTTGCCTTTAATGTTCAAATATGCTTTGGCTGGGGGAAATCATTCAATTGCCAGTTGTACTCTTCAATTGTCAAGAGCAAGCAGTGTTGTTATGCTTCTAGCATATGTTGCATATATCTTCTTCCAATTGAAAACTCATCGAAAAATATTTGATGCACAAGAGGTGGAAGATGAAGATGATGAAAAAGCAGTGATAGGATTTTGGAGTGCATTCAGTTGGTTGGTGGGTATGACATTGGTCATATCTGTGCTTTCTGAATATGTTGTGGGAACCATTGAGTCTGCTTCAGAATCTTGGGGAATTTCTGTTAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGGAATGCTGCTGAACATGCTGGTTCAATCATATTTGCTTACAAGAACAAATTGGACATATCTTTAGGTGTTGCTATGGGATCTGCTACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGATTGTTGCATGGATAATGGGTATAAGAATGGATTTGGACTTTAACCTTCTTGAAACTGGATGTCTTGGCTTTGCAATTATTGTTACAGCCTTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGATCCTTACTCTCTGTTACATTGTTATTTCTGCATGTTTTTTTGTTCTCAAATCTCCACAAATCAATCAATATGGTATCGCCACGCTTTGA 1314 0.3775 MSFFSDSTSRPFRTMNEDMENNNVVTQQNISSSSSSMVRKKSDIVLVTNNNVRFQILRNVMTNMKEVMLGTKLLVLFPAVPLAVAADFYSFGRPWIFALSLLGLAPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIIAILALHQNKIHVVKFSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLLLLLGLLCHLLPLMFKYALAGGNHSIASCTLQLSRASSVVMLLAYVAYIFFQLKTHRKIFDAQEVEDEDDEKAVIGFWSAFSWLVGMTLVISVLSEYVVGTIESASESWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVIVAWIMGIRMDLDFNLLETGCLGFAIIVTAFTLQDGTSHYMKGVILTLCYIVISACFFVLKSPQINQYGIATL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03678 437 FunFam Vacuolar cation/proton exchanger 124 268 - -
Trre9g03678 437 NCBIfam calcium/proton exchanger 59 422 - -
Trre9g03678 437 FunFam Vacuolar cation/proton exchanger 269 423 - -
Trre9g03678 437 Pfam Sodium/calcium exchanger protein 95 252 IPR004837 GO:0016020|GO:0055085
Trre9g03678 437 Pfam Sodium/calcium exchanger protein 279 419 IPR004837 GO:0016020|GO:0055085
Trre9g03678 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 427 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre9g03678 437 Gene3D - 124 267 IPR044880 -
Trre9g03678 437 Gene3D - 270 422 IPR044880 -
Trre9g03678 437 NCBIfam calcium/proton exchanger 78 422 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03678 Trre-Chr9 45214375 45219218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03678 26 428 Antiporters AT2G38170 66.910 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03678 K07300 - gmx:100816844 660.603