Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03670 ATGAACCCATTAACACTAGTGAAAAGGATTCAGAACATCAATTCAAGAGAAGCTGCGCTAAACATCAGCGAAGAAGCTTCGTGGCATACTAAATACAAAGATTCTGCTTATGTTTTTGTTGGTGGTATTCCCTTTGATCTTACTGAGGGTGATTTGCTAGCTGTTTTTGCTCAATGTGGGGAGGTTGTTGATGTTAATTTAGTAAGGGACAAAGGCACTGGAAAATCAAAGGGTTTTGCATTTATTGCATATGAAGATCAAAGAAGCACTAATCTTGCTGTTGATAATCTGAATGGAGCTCAGGTTTTAGGTAGGATTATTAGGGTTGATCATGTTGATAAGTATAAGAAGAAGGAAGAGGAAGATGAAGAGACAGAGCGGCAGAAAAGGGAGGCACGCGGTGTTTGTCGAGCTTTTCAAAGAGGGGAATGTACTCGTGGAGCTGGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACCGGTTGGGGTGAGAATGGCAATGCAAAATGGGATAATGACAAATATGATGGGCCCAAGAAAGAAAGAAGATATAACAACCAATCAAATCACATTCCAGAAACTAGAGACAGAGTTTCACGCCCCAAAGCTCATGATGACGATGATAAATTTGATGGAAGAGAAAATACCAGTAGAAGAGAAGCAAAGGGACCAAGAAGGCACGATGAAGATGAATTTGAACATCGGTTAAGAGAAGATCGACATAGGAGAGAAGAAAAAAGATCAAGGAGTGGTTACGAAGGTAGGGAATCCGAGCCAAGAGATAACAGAAAGGAAGACATGAGGTCAACAAAGCGAGATGATGTTGAGTTTGAGTCCAAGTCAAGAAATTCGGATGTAAGAGATGATAAAAGACCAAATAGGCAGGATGTTGATGATTTTCAAAGCAAGTCAAGAAAACATGGTAACAGGGAAGAGAGGAGATCAAGAAGGCACACTGAAGACGAATCTGTGCCGAGGTCAAGAGAAGATCATGATAGGGAGCATGATAGCAGATCATCTAGAAACGATACTGATCGATCTGAATCAAAAGGAAGATATGAATCTCAACGAAGAGAAGAAAAGAGGTCCGGAAGGTAA 1104 0.4058 MNPLTLVKRIQNINSREAALNISEEASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQCGEVVDVNLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGENGNAKWDNDKYDGPKKERRYNNQSNHIPETRDRVSRPKAHDDDDKFDGRENTSRREAKGPRRHDEDEFEHRLREDRHRREEKRSRSGYEGRESEPRDNRKEDMRSTKRDDVEFESKSRNSDVRDDKRPNRQDVDDFQSKSRKHGNREERRSRRHTEDESVPRSREDHDREHDSRSSRNDTDRSESKGRYESQRREEKRSGR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03670 367 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Trre9g03670 367 Gene3D - 9 126 IPR012677 -
Trre9g03670 367 MobiDBLite consensus disorder prediction 160 367 - -
Trre9g03670 367 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Trre9g03670 367 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Trre9g03670 367 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Trre9g03670 367 Coils Coil 115 135 - -
Trre9g03670 367 SMART rrm1_1 37 110 IPR000504 GO:0003723
Trre9g03670 367 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 262 - -
Trre9g03670 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Trre9g03670 367 Gene3D - 127 233 - -
Trre9g03670 367 MobiDBLite consensus disorder prediction 171 367 - -
Trre9g03670 367 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Trre9g03670 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Trre9g03670 367 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Trre9g03670 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03670 Trre-Chr9 45168097 45172922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03670 11 111 Eukaryotic Initiation Factors Gene Family AT4G34110 27.885 3.01e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03670 K13107 - gmx:100792988 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03670 9 45168097 45172922 Trre9g03670 9 45168097 45172922 ECH